RNA id: TU174074


Basic Information

Item Value
RNA id TU174074
length 1672
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G138393
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 909387 ~ 911080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTTATCAAGAACAtagagtttttatttattttgtagaaaacattcatttcacacatacaaaacaaattaaaataaaataaaaatcctcaTCACATTGCTTCAGTACATACAAATGAGAAAGGACTGCATCTCAGAAGACATAAATATCATCTGTCTCCCGCAGACGTCCCCGGACGGGACAGGACTGAGGCAGGAGAGCGGAAGGCACCCGTGGCATGGGNNNNNNNNNNGGGGAACAGACGTACGTGAGCCCTGTCTCTACACGCCCGACACTGCTGCGCCACACAGCCCAGCGCCGTTCTGAACACAGTGAGCACAACGGCCCACAGGCAGCTGTATAGACGCCCACTGGCTGTAGGGCTGGCAAGAGCACTGGTGCCTGCCCCCCTCTCAGTGGCGACCCACTTCATTAGAGCTTCAAAGGGACGTTTATTCCTCACTTGATCAAGTGTTActcacggggggggggagtcagTCAGCCACAGTGCCAGGgagtcagtgtgccagtcagtcagcgtgtcagtcagtcagcgtgtcagtcagtcaacagGAGTGTCATAAGAACAGAGAGAGCgctctccacccccccacaaTCTGCTCCGGCTGTTTGCCCATCGCTccagccctgccctgccccACAGTGAGCACAGCACCCTCCGCGCCCACAGTGCCCTGCCCTGCCGCGGGGAGATGTGGCTTCTGGACACCAGGGCCGGCTCAGCAAGAGGAGGGAGCCGTCCAGTCCAGTGCAGACGGGTCTGATGCGACTCCCCAGAGCAGCAGGTAGAGACAGAGGAAGCGCTTCTGACTGGCTCAGCTCTCGCACTCTCACACAGGACAGGACGCTCAGCTGTGCCCGGCTCTGTGCCAGCGCTGGCAGCAGACAGCAGGACACCGGCAGGGGGCACAGCTGTGCGCGCTCCGTCCTGGGAGAAGGGAGCTCTACAAATCTAGATCTATAGATTTGAAAAGCCGAGTGGTGTGCCGACACGTTTGCCATACAAAATCTTTGGGAAATGTTTACAAACCGATTGTGAAATGAAACCACGGGCAGATGGTCACTAATGAACACGATAATcgataatatttaataataataataataataataataataataataatataatattccaCTGTGTCAGAGCAGAGACGAGGGCAGTCTTGGGGTCGAGGGGTCAGTCCTGACTGTcactgagagggagagacggagggaTGGGGGGGAGTGGAGGGAGCTGGATTGTGAGAGAAAgtgtggggggtgtggggggggctgtTCTTTCCCAGGGTTTCGGTGTAAAGTCCACCTTCCACTTCCacctcctgccccccccccccccaacacactgGCCTGTGCGGTCTGCGGGAGGAGAGGGCGGTGAGACTGGCGGGGGGGTGTAGGAGTTCTCGTGGCGTCAGGCTGGCGTTGACGGGGCTCCGGGGGGCGGGGcggatgggggggagggggcgtGTCTCCTTCATCATTCCGACTCGTCCAGCCCGCATCGCCGTCTGAACTCCTGCCCTCGCTCGTGTATCCATTTATTAGACACTGCGGAAGAGAGGAGACGCGGTGAGACGGGGTCCTCTGAGCGCCGGACACGGCACTAAAACGGTCGTGTGTCGGGGGTGTGGTGtagtggtggggggggctggTGTGATGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174055 lncRNA upstream 59714 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 67659 819326 ~ 841728 (+) False G138379
TU174047 lncRNA upstream 67659 837209 ~ 841728 (+) True G138379
TU174044 lncRNA upstream 87822 813293 ~ 821565 (+) True G138378
TU174041 lncRNA upstream 98498 808896 ~ 810889 (+) True G138376
TU174084 lncRNA downstream 27067 938147 ~ 938495 (+) True G138399
TU174181 lncRNA downstream 177359 1088439 ~ 1088816 (+) True G138475
TU174210 lncRNA downstream 464627 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 1027067 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 1149297 2060377 ~ 2060604 (+) True G138593
AMCG00002746 mRNA upstream 5033 899823 ~ 904354 (+) True AMCG00002746
AMCG00002747 mRNA upstream 16195 890675 ~ 893192 (+) True AMCG00002747
AMCG00002740 mRNA upstream 73224 829429 ~ 836163 (+) True AMCG00002740
AMCG00002741 mRNA upstream 109371 776590 ~ 800016 (+) True AMCG00002741
AMCG00002735 mRNA upstream 149180 736334 ~ 760207 (+) True AMCG00002735
AMCG00002748 mRNA downstream 14151 925231 ~ 930598 (+) False AMCG00002748
AMCG00002753 mRNA downstream 80504 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002757 mRNA downstream 178859 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002760 mRNA downstream 192668 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002761 mRNA downstream 293738 1204818 ~ 1216164 (+) True AMCG00002761
TU174062 other upstream 10964 894828 ~ 898423 (+) True G138387
TU174076 other downstream 30 911110 ~ 913532 (+) True G138394
TU174081 other downstream 15389 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 15389 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 178198 1089278 ~ 1092952 (+) True AMCG00002757
TU174182 other downstream 184859 1095939 ~ 1097475 (+) True G138476

Expression Profile