RNA id: TU174076


Basic Information

Item Value
RNA id TU174076
length 1372
RNA type TUCP
GC content 0.52
exon number 4
gene id G138394
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 911110 ~ 913532 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACTTGTTGCCCACCAGGACGGGGCAGGCTGCGTGCCGTGTGCTGTAGTCGCCCTCACCACTCGCAAACAGgttataCCAGAACACTGCCATgccctgtaacacacacacactcagacaacAGTCAGATTATAAAGACTGATAAAGTGCACACACTGATACAAGTTCAGACCAACTGACACACATTGATTGTATACACGTAAATAGtgtacaaacacagacacacacagacactcagccTCCTGCTATGGTTCTCGTACCTTCTTTGGCCACACAGCTGCTCCCACCTCGGGGAAGACGGTGGCGATGCGGTTGCCCGTGCCCAGCTCCTTGAACGCATCTGGCTCGTCTTTCTGTGGGGAGAGGAGAGATCaaaggtcaggggtcaggggggtcaggagTCCGGACACAGGCAGAGACGCAGAGACGCAGGTTAatacagggagacagagagggagagagagaggggttaaccGAGTACATGCACAGGTCATGCCATTTTCAGGAGACCACACTGATTCAATaaggtacatttatttatttctgtcattaGTTGTTTCTGTGAGACTTTTTTCTCCCAATCAAATCTCAATTGGAAGTGCGACTCATTATCACAGGAGGAGAGACGCACAgagcaccccccccccgccccgctgCATCTGTATGGAGAGCACATTCACATGCAACGACAGGGCAAGCATGGTGCAGCAGGTgggaagacagagagacaggcaagCCAGACAGACAGCAACCAAAACAGAATCTCCAAGTGGCTCATGGGTAGGGCTGCCCCTGACCAACCCCCCGACCCCCCACAGCCCCCTCGCAGTCTGGTGTGAGGTCAGAGGGTAGTTGTGACCAAAGCAGGGATgggtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcgctagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactcttAGAGactgaacattcaaaaacagactggataggatctttggatcacttagttattaatggacaccaaacaagcacgatgggggaATGGGCTCCTCTCTCTTGTGTTCCTATGTGTGCAAGTGTGAGTGAAGAAGTCTGatctcattttctctctttccctccattGCTTTGagaccccctctctctctcactctcagagACCCTTTCTCTGGACAGAACTGGTGTCACTCTAGAGGGAGACATGCGTCTGGCTGCCAGCAGGGGGCAGCGTAGAGGTTTGCTGCTCAAGCAGCTGTGGACTCTTAAGTGTCCAATGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174074 lncRNA upstream 30 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 61437 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 69382 819326 ~ 841728 (+) False G138379
TU174047 lncRNA upstream 69382 837209 ~ 841728 (+) True G138379
TU174044 lncRNA upstream 89545 813293 ~ 821565 (+) True G138378
TU174084 lncRNA downstream 24615 938147 ~ 938495 (+) True G138399
TU174181 lncRNA downstream 174907 1088439 ~ 1088816 (+) True G138475
TU174210 lncRNA downstream 462175 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 1024615 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 1146845 2060377 ~ 2060604 (+) True G138593
AMCG00002746 mRNA upstream 6756 899823 ~ 904354 (+) True AMCG00002746
AMCG00002747 mRNA upstream 17918 890675 ~ 893192 (+) True AMCG00002747
AMCG00002740 mRNA upstream 74947 829429 ~ 836163 (+) True AMCG00002740
AMCG00002741 mRNA upstream 111094 776590 ~ 800016 (+) True AMCG00002741
AMCG00002735 mRNA upstream 150903 736334 ~ 760207 (+) True AMCG00002735
AMCG00002748 mRNA downstream 11699 925231 ~ 930598 (+) False AMCG00002748
AMCG00002753 mRNA downstream 78052 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002757 mRNA downstream 176407 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002760 mRNA downstream 190216 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002761 mRNA downstream 291286 1204818 ~ 1216164 (+) True AMCG00002761
TU174062 other upstream 12687 894828 ~ 898423 (+) True G138387
TU174081 other downstream 12937 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 12937 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 175746 1089278 ~ 1092952 (+) True AMCG00002757
TU174182 other downstream 182407 1095939 ~ 1097475 (+) True G138476
TU174214 other downstream 487757 1401289 ~ 1402429 (+) True G138506

Expression Profile