RNA id: TU174285


Basic Information

Item Value
RNA id TU174285
length 636
lncRNA type intronic
GC content 0.44
exon number 1
gene id G138559
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1933360 ~ 1933995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGACAAATCCTCTATTGAAACTATGACatgcatttctctttttctgtgcaTGCTTACAATTTCATGGCTGAAGTCCATTGCTAGATATACAGTCTATAAAGAGCTCTCCCTTTCCTTGCCCTGCCTCCCAACATGGTGACTGTTTTGATCTGCTGGACCTCTATAGCTTTCCTGGGATATCCCATTTGTTCCTCAAAGGCCGGGTCTGAGTTGCTGAACACGATAGTCCGCACTGTGCTGTAGAGTCCAGAGAAGACCCGGCCTACCAGAGTTATTTAAACACCTAAGTAGACGAACTGCTCTGGAACCCTTGTATCACCTGAATGCTTTTTTATGGGATTATgggatttatgtatttattttaatatattgttagcATTTCTAGTCTTGATCAGAATTAGATCGGCTCATACAGGcctgtgcatctctgtctgtcttgaGAAGTCTAGCAGACGGAGACACTTGGTTCTCATAACATCAGATTTCCCTGCCTGGACGCTTTCAGGGAATGAGGTGAACGAGGCTGTATTGATAACGAATCTTCCTGTTGTGTCTGAGAGTCATCCACAAGGGCTCAGAAGTGCAGAGGTGGAAATGTACCAGCGTGTTGTACACTTCTACTCAGTAGCTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174258 lncRNA downstream 415307 1489562 ~ 1518053 (-) True G138535
TU174126 lncRNA downstream 1034943 895012 ~ 898417 (-) False G138430
TU174128 lncRNA downstream 1034943 895012 ~ 898417 (-) True G138430
TU174129 lncRNA downstream 1034943 895012 ~ 898417 (-) False G138430
TU174099 lncRNA downstream 1126302 805760 ~ 807058 (-) False AMCG00002743
TU174334 lncRNA upstream 149903 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 568118 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 757435 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 773874 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 780382 2714377 ~ 2714688 (-) True G138738
AMCG00002767 mRNA downstream 381376 1541186 ~ 1551984 (-) True AMCG00002767
AMCG00002764 mRNA downstream 523232 1395011 ~ 1410128 (-) True AMCG00002764
AMCG00002758 mRNA downstream 829462 1094995 ~ 1103898 (-) True AMCG00002758
AMCG00002755 mRNA downstream 863966 1035547 ~ 1069394 (-) True AMCG00002755
AMCG00002756 mRNA downstream 898761 1033446 ~ 1034599 (-) True AMCG00002756
AMCG00002768 mRNA upstream 16388 1950383 ~ 1968438 (-) True AMCG00002768
AMCG00002771 mRNA upstream 122432 2056427 ~ 2058241 (-) True AMCG00002771
AMCG00002772 mRNA upstream 193635 2127630 ~ 2168579 (-) True AMCG00002772
AMCG00002775 mRNA upstream 355113 2289108 ~ 2329191 (-) True AMCG00002775
AMCG00002782 mRNA upstream 507876 2441871 ~ 2444589 (-) True AMCG00002782
TU174137 other downstream 1007962 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1009126 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1009126 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1111769 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1122355 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 784213 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 2003769 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 2067655 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 5128478 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 5414816 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile