RNA id: TU174435


Basic Information

Item Value
RNA id TU174435
length 202
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G138678
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2502113 ~ 2502314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGATCTTTGGTTATTACATCAAATAATAGGTTGCAAAAATTGCCATGTATCCCGAATAGTAAATACATAACCTTTGAATGTATAACCTTTGAATATTGAATGTATATCGTTTGATGGGGGTAATTTCTGCATGTGCAGCCAGTGATTGCTTCATTCGAACCACGATTTCAGGGAAAATAAAGGCAGACAAATGTTAAAC

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174334 lncRNA downstream 418016 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 568118 1933360 ~ 1933995 (-) True G138559
TU174258 lncRNA downstream 984060 1489562 ~ 1518053 (-) True G138535
TU174126 lncRNA downstream 1603696 895012 ~ 898417 (-) False G138430
TU174481 lncRNA upstream 189116 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 205555 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 212063 2714377 ~ 2714688 (-) True G138738
TU174507 lncRNA upstream 218098 2720412 ~ 2720704 (-) True G138742
TU174584 lncRNA upstream 558247 3060561 ~ 3113082 (-) True G138799
AMCG00002785 mRNA downstream 10230 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002781 mRNA downstream 35418 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 51972 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002782 mRNA downstream 57524 2441871 ~ 2444589 (-) True AMCG00002782
AMCG00002775 mRNA downstream 172922 2289108 ~ 2329191 (-) True AMCG00002775
AMCG00002790 mRNA upstream 132977 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002791 mRNA upstream 158592 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002799 mRNA upstream 245798 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 248475 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 256560 2758874 ~ 2759867 (-) True AMCG00002798
TU174137 other downstream 1576715 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1577879 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1577879 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1680522 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1691108 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 215894 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1435450 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1499336 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4560159 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4846497 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile