RNA id: TU174481


Basic Information

Item Value
RNA id TU174481
length 440
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G138720
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2691430 ~ 2691869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaagactgatcctcagattggaagctgtaggcattcagggtaatgtaagtagatgattatgaactggttgatgtctaggaaacagagggtgtcgattagaggagttgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgcttttctaatctatattaatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaaataggcagctcagcagatacaatctcggcagcacaggctattcagagggacttagataatattcagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagatgaagtaacgcatgagaaagacc

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174435 lncRNA downstream 189116 2502113 ~ 2502314 (-) True G138678
TU174334 lncRNA downstream 607333 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 757435 1933360 ~ 1933995 (-) True G138559
TU174258 lncRNA downstream 1173377 1489562 ~ 1518053 (-) True G138535
TU174128 lncRNA downstream 1793013 895012 ~ 898417 (-) True G138430
TU174502 lncRNA upstream 16000 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 22508 2714377 ~ 2714688 (-) True G138738
TU174507 lncRNA upstream 28543 2720412 ~ 2720704 (-) True G138742
TU174584 lncRNA upstream 368692 3060561 ~ 3113082 (-) True G138799
TU174679 lncRNA upstream 684379 3376248 ~ 3378038 (-) True G138873
AMCG00002791 mRNA downstream 20357 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002790 mRNA downstream 37020 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002785 mRNA downstream 199547 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002781 mRNA downstream 224735 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 241289 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002799 mRNA upstream 56243 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 58920 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 67005 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002802 mRNA upstream 274125 2965994 ~ 2973796 (-) True AMCG00002802
AMCG00002807 mRNA upstream 423992 3115861 ~ 3121097 (-) True AMCG00002807
TU174137 other downstream 1766032 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1767196 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1767196 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1869839 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1880425 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 26339 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1245895 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1309781 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4370604 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4656942 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile