RNA id: TU174503


Basic Information

Item Value
RNA id TU174503
length 312
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G138738
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2714377 ~ 2714688 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCCGAGTCGGTCGCCTTGGACGTTACATAATCGACGGCCTTCTTCCTTTCCAGTGTTTTCGTGTGAATGATCACCATGGTAAGGCACATCCTTGGCCCGGTGCGTTGCGGTGCAGGCGGAGGCTCCCGGAGGCCATCTTTACGGGCGGCCCGTGGCGTCAACGGTCTGTGGTCCCGTGGGCTCTACTGGGATGGTCCCCTCACCTCCTCCTGCCCCTGAGCCAACAAAGACACGAGAGATCCCGTGAAGCAGCACAGAGACTGGCTTTCCCGAAGCATGAACAGAGCAGACTAACTACACAACTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174502 lncRNA downstream 6302 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 22508 2691430 ~ 2691869 (-) True G138720
TU174435 lncRNA downstream 212063 2502113 ~ 2502314 (-) True G138678
TU174334 lncRNA downstream 630280 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 780382 1933360 ~ 1933995 (-) True G138559
TU174507 lncRNA upstream 5724 2720412 ~ 2720704 (-) True G138742
TU174584 lncRNA upstream 345873 3060561 ~ 3113082 (-) True G138799
TU174679 lncRNA upstream 661560 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 1210479 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 1360927 4075615 ~ 4076838 (-) True G138948
AMCG00002791 mRNA downstream 43304 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002790 mRNA downstream 59967 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002785 mRNA downstream 222494 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002781 mRNA downstream 247682 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 264236 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002799 mRNA upstream 33424 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 36101 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 44186 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002802 mRNA upstream 251306 2965994 ~ 2973796 (-) True AMCG00002802
AMCG00002807 mRNA upstream 401173 3115861 ~ 3121097 (-) True AMCG00002807
TU174137 other downstream 1788979 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1790143 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1790143 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1892786 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1903372 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 3520 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1223076 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1286962 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4347785 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4634123 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile