RNA id: TU174507


Basic Information

Item Value
RNA id TU174507
length 293
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G138742
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2720412 ~ 2720704 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCACTGGAATAGAAGCAGTCTATGATCGTGCACTCACAGAGAACATGTGCATTgatgtgtgcgtgtctgtaagtgcatgtgtgtgcgtgtgtgtgcttgcTTGCACTTGCATGTGTGCAGGCTGGGTTAGTTGCAAACTATCCAGGATGTTAGTGGGTCTGTGAACCATGAAGCCATACAGAGAGTCTGTTGCAAGATACGCTTTATCAAGAGCGAGGAACAAGTGcgagaaaatgttttaaatatctcCTGACAGTTACGACACGGGACTGTAAAACATCCTgcagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174503 lncRNA downstream 5724 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 12337 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 28543 2691430 ~ 2691869 (-) True G138720
TU174435 lncRNA downstream 218098 2502113 ~ 2502314 (-) True G138678
TU174334 lncRNA downstream 636315 2083898 ~ 2084097 (-) True G138594
TU174584 lncRNA upstream 339857 3060561 ~ 3113082 (-) True G138799
TU174679 lncRNA upstream 655544 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 1204463 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 1354911 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1735088 4455792 ~ 4456002 (-) True G139024
AMCG00002791 mRNA downstream 49339 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002790 mRNA downstream 66002 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002785 mRNA downstream 228529 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002781 mRNA downstream 253717 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 270271 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002799 mRNA upstream 27408 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 30085 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 38170 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002802 mRNA upstream 245290 2965994 ~ 2973796 (-) True AMCG00002802
AMCG00002807 mRNA upstream 395157 3115861 ~ 3121097 (-) True AMCG00002807
TU174506 other downstream 993 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 1795014 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1796178 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1796178 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1898821 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 1217060 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1280946 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4341769 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4628107 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 5210553 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile