RNA id: TU174584


Basic Information

Item Value
RNA id TU174584
length 542
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G138799
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3060561 ~ 3113082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGTTTTGTATATGTTGCATTCTTGGTGGATGTCGTCTTGTGGAAACCTCTGTTCTGTTGTTCTTGGTTTTCTACTCTTCATGCAGTTCTTTACTCCTTTGATATAGtacagatttaaacaaaataagcatcattattattcttactAATATTGTTTCCTTAAAACTAGTTTTATCTAGGAAGTCTTTCTTTCACTTTGTGTTTCATACAGTTcaattttagtgtttttctgcAACAAAATGGGCTTCAGTGACCCATGGTTATGGATTAGACTGAGTTCTGTGTGACTAAAATTTGGTGTTGCCCTCAGACTTTGTATTTAACTCGGTGGGTAGTGCCAACACTTTTTTATATAGACATGCAATAAATGGTGTTGTATGGTTTCACTTCTCTGCCACGCCTGCACGCCCTGTTTCTGTTGACTTGTACGTTCACACCAACAAAGCATCCGGAAAAAATTTGAAATGGCATGTAACGAACTTTCATacttaatgtaataaataaacatgttttttaaacaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174507 lncRNA downstream 339857 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 345873 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 352486 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 368692 2691430 ~ 2691869 (-) True G138720
TU174435 lncRNA downstream 558247 2502113 ~ 2502314 (-) True G138678
TU174679 lncRNA upstream 263166 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 812085 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 962533 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1342710 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 1352872 4465954 ~ 4466189 (-) True G139025
AMCG00002802 mRNA downstream 86765 2965994 ~ 2973796 (-) True AMCG00002802
AMCG00002798 mRNA downstream 300694 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002797 mRNA downstream 309095 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002799 mRNA downstream 311254 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002791 mRNA downstream 389488 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002807 mRNA upstream 2779 3115861 ~ 3121097 (-) True AMCG00002807
AMCG00002809 mRNA upstream 11842 3124924 ~ 3133886 (-) True AMCG00002809
AMCG00002808 mRNA upstream 25866 3138948 ~ 3140649 (-) True AMCG00002808
AMCG00002806 mRNA upstream 49719 3162801 ~ 3168504 (-) True AMCG00002806
AMCG00002805 mRNA upstream 56084 3169166 ~ 3180564 (-) True AMCG00002805
TU174506 other downstream 341142 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 2135163 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 2136327 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 2136327 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 2238970 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 824682 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 888568 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3949391 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4235729 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 4818175 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile