RNA id: TU174604


Basic Information

Item Value
RNA id TU174604
length 3370
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G138816
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3172907 ~ 3177610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGAGAACCTCCTCGGTCAGTTATAACTTTTCACTCTGGCCAGACCTTTCACaccttttccatttcctgtgGCCCCTCTGATCGGCCGCAATCTGTTTTCAATGctgtttcacattaaaaactgaCGGAGAtctacagtacaatacagtacttcTAAAGAAAGTCTTTTCTAACCAGCTGGTATTGTGTGTAGGAGGTCTGACCGGACCGACTCTGGCCAGAAGACGCTCCGTACGTCCCCCCAGTTAGGACACAACAGCTGTGTCTCGTGTTCCTGCGAATTGATTCCTCTCTCGCTGCTGGGAACTCAGAGGACACACCAGGCCAGCGGAACAGTCATGGGAGATGTTGTCATTttcgtttagtttttttttaatgattcccTCGTAACAGAGTGGGCAGTGTCTTCTCACAGCTGGGATGTTTAGCGGCAATATTGTCACCGGGCTTTCCAGATGGGTGGTCGTTGCCTTCGAACTTGGATCCTCGGAGAGAAGACTGCAAGCTCTCTTGCTTTTTTGATTTTCTGGACCGATCGGCTTCACGGACCTCGAACCAGCCTCCCTGGCGAATGGCCTTTTCTCTCTCAACCTCTCCCGTAGGGTGTTGAGCAGAAGTTTGCAAACAAAAACCCAGTGAAGAGATCGCGGCCCCAGAAGAATCCCCTTCTACCCTCATCTTGTCTGCAAGCTCTACGCCTTGAAGAACCACATTTGTAACGCTTCCACTTTCTGAAGGGTATTTGGGAAACAGGTGCCATTGAAATTGCCTTTCTGAATTTGCGGAAAAGcctttttgtctttaattttttCCCTAGTCTTAGTCCCGAGTCCATCAATCCTGACAAATGTCTGTCACGTTTGAATGCTCCCACGTTTACTCTAATTAAGTGTCTGGTATTAACCGTGAACAGCGAGTACATGAAGTTACGCGAGCCAAATAACCCTGCAGATTCAAACTAGCCTTGGAAATGGAGTAGAAACTGCTCATCGGGGTATTTATAACAATATGAAACTAAGCCTTTAAGAACTCGAATTGCAGCTGCTTGTCATGTCAAGGCCAAAGTAAACTTCATtaacatttaagaatatttttttaaatagcatatTTTTTAACCGCATTGTAGCAGcgcgttttctttttaatcagcAACTTAACAGATATTGTTTACCTATCgtagtattttaatgatttgcaCATAATGTGGTgtggatgtttgtgtgtgtgtgtgtgtgtgtgtgtggagctgtgcagtgtttttgtgtttgaagtCAGTTCTCATAGTGTTCCCTTGAAATGAAACCTTGAAATGCTGCTCATGTTAGAAGTGAGTGTTTTCCTAGACAAAAGGAATGGAGACGTGTCACGTGTGCAGCTTCATAGGTCGTAGCGGTACAGCACGGTGCCTGGTACTCATAGTGACGCCGTAGCCGAGTGTTTGGAGACACGTAGGATGATAGTGTAGGACGGACCACAGGAACTGGCACGCAGGTCTGTCTGGAGCCTTGTTAAGGGGCTTTCGCTCACACTGCAAGGAAATGGCTTGAGTGGAGCAACAGGACCTGGTCTTTAGGAAGCTAGAGTTAAAATGTCATGTGTACTAAAAATACACCAAATATTAATCGTTAATTAACATTTAGGTTGGGTACTTTGTGGTATTGCAGTACAGTGATCATATTTCAGACTCTCACAGCCAGCCCAAGCCTCGCCGTGCCTTAGTGTGCGATGCACTAAAATGCCTGCGTGTTTCCGGTGCAAACGGGCGAATCTGCGCTAGGATCTGGTCTCGGCCTGGTCCACGGTGCTGTGGAGAGGACCTTTGCCGTCACTTAGCAGGACAGAGAGGAGGAATGGGTTGTTTTGTGAGAGCTAGCGAGCGCATTGCAAACACAGTATGTGTGATTTGCACCCCTGCACAAAAAAAGACGACAAAttgttttttagattcgGTGTAtccagaaataataattgccaAATCTCTAAGTATCCACAGCTGGCAGCTCGGTCCCCCGCATGTGCTGTAGAGCATCTGAAGCTGAAGACCTGGGGACGTCCCCGTGTCAGCTAAAATAGGACCTCGAGGACGTGCATGATGTTTTAAGGTGCGCGGTCATGAGGAGTCCCAGGCAAACCCTGGACAGTGTCAGGACGTCAGCATGTCAGCATTTAAAACCTAGAAGTAGGCTTTTTCTGTCAGTATTCGCTTTTAAGATTCCCaattcatatttagttttttcctttattatgcCTTTGAGATATTCTTACCCTTATCATCGAGCATTTCTTACTGAAACCAGATCAGCCGAGTAGGTGTAAATCTACAGCAGTAGTGCAGAGTTGAAATGCTGGGTATGTCCGCCGCTTAATCGCCTTGTCAAGTTCACCAGAGCAAACGCAGTGCTGTAGTTCTGAAGAACAGGCTCCACGTGGCGTTTGTGTACACAAGGTCAAGGTCATTGTCTTTTAAACAGAGCAGACAGTGACAAATCGCAGGGAAAGGTGGAGAACCATgtctttaaagaaatgttttgttttggggggtgttgtgttgttgtgtgtatgAGACGACCCATTTACTGTGTCTGACATTGGACTGCGTCTAGacagtgtttattttgcagACATCTGAAGCTGGCAGAGACGTCCCTGTGTTTGGGTGTGTAAACGTACTGAGCGAGACTTCTTGCCTTTCCTATTTAACCACACGTTTGATTATACTTGTTACAGGAACTTTAGTGCTTTAATTTATTACCATGACTAAGAttgagattatttttattattatgataattattatatgcctatagatagagagattttgtgtgaaagtgttttgtttttttcctaattcTTTGGTAAAACTTTGCTTTACGCAGGAGTTGACTTTACCAACTTTTAGGATTTTCTTAAATTGTTCTGATTTTCAGAATGTTGTCTAACCAGCCGGAActgattcattttcatgtaGAAAATCATTGCGgttcaaacaaaaaatcattgcggttcaaacaaaatgtaaatattcgAATAGTCTTTTAACAAGCTGAcggtacatttaaaatgtgcagcaCCTACGAGAGCCCGCGGAAATCTGTATCTCCATCtaaagccttttatttttcttgtctggGAATTCTTGTATCATAATCCAGTGACGTCATAAGTAATTGTTTAATGGTGTTTAAAAAacttaaagaaggaaaaaaaaaaaaaaagtcaagactGTTGTTGGCATCATTGCATTGTACATGTAGAAACGACCTGTGAGAGTAACCTAAACTAATGTCCATTTAAACTTTCAAAGCTCTGCTTTTTGTACGTCATAAGTAAAAATTCAGTTTTCTAACCGGTCTGTCCTGTCTGCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174480 lncRNA upstream 481067 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 505369 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 709271 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 1112303 2060377 ~ 2060604 (+) True G138593
TU174289 lncRNA upstream 1233782 1938147 ~ 1939125 (+) True G138562
TU174676 lncRNA downstream 198636 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 549887 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 747559 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 747559 3925169 ~ 3928619 (+) False G138905
TU174744 lncRNA downstream 812314 3989924 ~ 3990348 (+) True G138927
AMCG00002804 mRNA upstream 446 3170343 ~ 3172461 (+) True AMCG00002804
AMCG00002803 mRNA upstream 121028 3047476 ~ 3051879 (+) True AMCG00002803
AMCG00002801 mRNA upstream 216137 2909953 ~ 2956770 (+) True AMCG00002801
AMCG00002800 mRNA upstream 287811 2865443 ~ 2885096 (+) True AMCG00002800
AMCG00002794 mRNA upstream 396300 2768451 ~ 2776607 (+) True AMCG00002794
AMCG00002810 mRNA downstream 17530 3195140 ~ 3198501 (+) True AMCG00002810
AMCG00002814 mRNA downstream 79436 3257046 ~ 3267033 (+) True AMCG00002814
AMCG00002816 mRNA downstream 170572 3348182 ~ 3348766 (+) True AMCG00002816
AMCG00002815 mRNA downstream 181183 3358793 ~ 3376168 (+) True AMCG00002815
AMCG00002821 mRNA downstream 257533 3435143 ~ 3435592 (+) True AMCG00002821
TU174568 other upstream 56826 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 678313 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 1762819 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1770478 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 2075432 1095939 ~ 1097475 (+) True G138476
TU174694 other downstream 251079 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 851914 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 1919121 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 2970138 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 3889333 7066943 ~ 7073536 (+) True AMCG00002939

Expression Profile