RNA id: TU174764



Basic Information


Item Value
RNA id TU174764
length 401
RNA type TUCP
GC content 0.62
exon number 1
gene id G138941
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4029524 ~ 4029924 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGAAGCAGTGCTGCAGTGCCACACCGGGTCCCTGGCCACCAGAGGGCAGTGCGGCTTGTCTTGTTTCGATGTTGCACAGATATCTCAGTCCCACCTGCACCAGCCCAACACTAAGCAAGCAGATTCCTCACTCCCTCCCCGGCATGCCCCACGTCCACTCTGTCCTTTCAGACCCACCTCTGAGGCAAAGGACTCCTCCGTCTCCGGCTGACGGGCCGCTGCTTCTGCCGGCTGTGGgggagctgagagagagggcaggggcCGTGCAGGAGGGTTTATGTCTGGAGTCGCAGTTACCGCTGTCGTTGTGGATCGTATCTGTTGTTGGTGCTTCCCCCGGGCAATGCTGTGGCGTCGGCAGAGCGGGGCAGGCTGTGCTGCGTCTGTGTGTGACTCTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174763 lncRNA upstream 4779 4024442 ~ 4024745 (+) True G138940
TU174744 lncRNA upstream 39176 3989924 ~ 3990348 (+) True G138927
TU174713 lncRNA upstream 100870 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA upstream 100905 3925169 ~ 3928619 (+) False G138905
TU174711 lncRNA upstream 301793 3727497 ~ 3727731 (+) True G138903
TU174771 lncRNA downstream 42357 4072281 ~ 4076788 (+) True G138946
TU174883 lncRNA downstream 553941 4583865 ~ 4584167 (+) True G139038
TU174889 lncRNA downstream 596733 4626657 ~ 4712825 (+) True G139044
TU174942 lncRNA downstream 768689 4798613 ~ 4802244 (+) True G139084
TU175041 lncRNA downstream 1037548 5067472 ~ 5068895 (+) True G139170
AMCG00002833 mRNA upstream 7130 4016680 ~ 4022394 (+) True AMCG00002833
AMCG00002834 mRNA upstream 23051 4000290 ~ 4006473 (+) True AMCG00002834
AMCG00002827 mRNA upstream 55205 3971112 ~ 3974319 (+) True AMCG00002827
AMCG00002826 mRNA upstream 318207 3711012 ~ 3711317 (+) True AMCG00002826
AMCG00002825 mRNA upstream 321846 3699569 ~ 3707678 (+) True AMCG00002825
AMCG00002835 mRNA downstream 1444 4031368 ~ 4033632 (+) True AMCG00002835
AMCG00002839 mRNA downstream 7786 4037710 ~ 4041401 (+) True AMCG00002839
AMCG00002831 mRNA downstream 13669 4043593 ~ 4052584 (+) True AMCG00002831
AMCG00002832 mRNA downstream 26515 4056439 ~ 4071275 (+) True AMCG00002832
AMCG00002840 mRNA downstream 132602 4162526 ~ 4186873 (+) True AMCG00002840
TU174694 other upstream 433416 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 913443 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 1534930 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 2619436 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 2627095 1401289 ~ 1402429 (+) True G138506
TU175054 other downstream 1066807 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 2117824 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 3037019 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 3346763 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 3893258 7923182 ~ 7926832 (+) True G139784

Expression Profile