RNA id: TU174871


Basic Information

Item Value
RNA id TU174871
length 200
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G139026
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4476464 ~ 4476663 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTTACCGAGAAGAGAAATCTGCAACCAAATAAGATATAGGAAGTTCATTAGGGGAGTTATCTGTCACTGGCttctacagaaatgtaatttttcccAACTTATCACTAGAAGGCCACCTAAATCCAAATTTCGCTTAAACTGTCACTCCGGATACTTGCATGAATTTCCAGCTTCTTAATCATGTTTGACAGGACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174870 lncRNA downstream 10275 4465954 ~ 4466189 (-) True G139025
TU174869 lncRNA downstream 20462 4455792 ~ 4456002 (-) True G139024
TU174779 lncRNA downstream 399626 4075615 ~ 4076838 (-) True G138948
TU174717 lncRNA downstream 547846 3925167 ~ 3928618 (-) True G138906
TU174679 lncRNA downstream 1098426 3376248 ~ 3378038 (-) True G138873
TU174872 lncRNA upstream 18365 4495028 ~ 4495418 (-) True G139027
TU174873 lncRNA upstream 19499 4496162 ~ 4496362 (-) True G139028
TU174874 lncRNA upstream 30841 4507504 ~ 4511307 (-) True G139029
TU174884 lncRNA upstream 107202 4583865 ~ 4584172 (-) True G139039
TU175135 lncRNA upstream 919676 5396339 ~ 5396559 (-) True G139249
AMCG00002843 mRNA downstream 139538 4306326 ~ 4336926 (-) True AMCG00002843
AMCG00002844 mRNA downstream 178128 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002841 mRNA downstream 255403 4219176 ~ 4221061 (-) True AMCG00002841
AMCG00002838 mRNA downstream 440584 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002836 mRNA downstream 446469 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002851 mRNA upstream 105919 4582582 ~ 4600633 (-) True AMCG00002851
AMCG00002854 mRNA upstream 202044 4678707 ~ 4714306 (-) True AMCG00002854
AMCG00002855 mRNA upstream 270084 4746747 ~ 4750268 (-) True AMCG00002855
AMCG00002856 mRNA upstream 273942 4750605 ~ 4754918 (-) True AMCG00002856
AMCG00002859 mRNA upstream 321924 4798587 ~ 4826031 (-) True AMCG00002859
TU174755 other downstream 473660 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 526296 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1757045 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3551066 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3552230 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 2585810 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 2872148 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3454594 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 4008698 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4370369 8847032 ~ 8847840 (-) True G140006

Expression Profile