RNA id: TU174884


Basic Information

Item Value
RNA id TU174884
length 308
lncRNA type intronic
GC content 0.53
exon number 1
gene id G139039
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4583865 ~ 4584172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatcaatgagccttggctgcccatgaccctgtcaccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174874 lncRNA downstream 72558 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 87503 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 88447 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 107202 4476464 ~ 4476663 (-) True G139026
TU174870 lncRNA downstream 117676 4465954 ~ 4466189 (-) True G139025
TU175135 lncRNA upstream 812167 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 1573571 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1898095 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 2417493 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 2634697 7218869 ~ 7219192 (-) True G139668
AMCG00002843 mRNA downstream 246939 4306326 ~ 4336926 (-) True AMCG00002843
AMCG00002844 mRNA downstream 285529 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002841 mRNA downstream 362804 4219176 ~ 4221061 (-) True AMCG00002841
AMCG00002838 mRNA downstream 547985 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002836 mRNA downstream 553870 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002854 mRNA upstream 94535 4678707 ~ 4714306 (-) True AMCG00002854
AMCG00002855 mRNA upstream 162575 4746747 ~ 4750268 (-) True AMCG00002855
AMCG00002856 mRNA upstream 166433 4750605 ~ 4754918 (-) True AMCG00002856
AMCG00002859 mRNA upstream 214415 4798587 ~ 4826031 (-) True AMCG00002859
AMCG00002860 mRNA upstream 253548 4837720 ~ 4847720 (-) True AMCG00002860
TU174755 other downstream 581061 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 633697 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1864446 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3658467 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3659631 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 2478301 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 2764639 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3347085 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3901189 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4262860 8847032 ~ 8847840 (-) True G140006

Expression Profile