RNA id: TU175087


Basic Information

Item Value
RNA id TU175087
length 141
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G139205
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5239350 ~ 5239490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAAGCACTGCTGAACAAAAACTGCAGTAAATGAAGATCAGGGACACTTTACATACAGGATAAAAGCTTCTCCTTATAAAGCACTGaccttattattataaattactgATATTAACAGGAAAAgttgttttagtttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175041 lncRNA upstream 170455 5067472 ~ 5068895 (+) True G139170
TU174942 lncRNA upstream 437106 4798613 ~ 4802244 (+) True G139084
TU174889 lncRNA upstream 526525 4626657 ~ 4712825 (+) True G139044
TU174883 lncRNA upstream 655183 4583865 ~ 4584167 (+) True G139038
TU174771 lncRNA upstream 1162562 4072281 ~ 4076788 (+) True G138946
TU175122 lncRNA downstream 126945 5366435 ~ 5366683 (+) True G139238
TU175151 lncRNA downstream 200287 5439777 ~ 5442279 (+) True G139263
TU175250 lncRNA downstream 578562 5818052 ~ 5819125 (+) True G139351
TU175425 lncRNA downstream 898631 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 955121 6194611 ~ 6197030 (+) True G139498
AMCG00002871 mRNA upstream 5523 5231982 ~ 5233827 (+) True AMCG00002871
AMCG00002868 mRNA upstream 51904 5153304 ~ 5187446 (+) True AMCG00002868
AMCG00002867 mRNA upstream 214767 5012179 ~ 5024583 (+) True AMCG00002867
AMCG00002866 mRNA upstream 230605 4963957 ~ 5008745 (+) True AMCG00002866
AMCG00002864 mRNA upstream 286945 4952100 ~ 4952405 (+) True AMCG00002864
AMCG00002872 mRNA downstream 37425 5276915 ~ 5285072 (+) True AMCG00002872
AMCG00002881 mRNA downstream 141123 5380613 ~ 5383693 (+) True AMCG00002881
AMCG00002882 mRNA downstream 144362 5383852 ~ 5386429 (+) True AMCG00002882
AMCG00002880 mRNA downstream 179185 5418675 ~ 5435914 (+) True AMCG00002880
AMCG00002888 mRNA downstream 298000 5537490 ~ 5616805 (+) True AMCG00002888
TU175054 other upstream 140606 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1209426 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1643242 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2123269 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2744756 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 908258 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1827453 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 2137197 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2683692 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 2798087 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile