RNA id: TU175135


Basic Information

Item Value
RNA id TU175135
length 221
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G139249
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5396339 ~ 5396559 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgTACAGAGTGCCTAAGGCATCAGAAATTTGaaagaatatattaaatgttaaagtaatacaaaataaataaacactaaataaatagatcaattaataataatgagaaataaatagtCATGGTGTCCTCTAAGACTCAGAAGGACCAGGATTTGTTTGTTCAAGGTTGGAGTCCATATGAGCCAGCCTTCGAGCAGAGACTGGTGTCTTTGCAGCCCTGAC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174884 lncRNA downstream 812167 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 885032 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 899977 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 900921 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 919676 4476464 ~ 4476663 (-) True G139026
TU175433 lncRNA upstream 761184 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1085708 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 1605106 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1822310 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 2058985 7455544 ~ 7458491 (-) True G139752
AMCG00002877 mRNA downstream 16781 5366815 ~ 5379558 (-) True AMCG00002877
AMCG00002878 mRNA downstream 41352 5347443 ~ 5354987 (-) True AMCG00002878
AMCG00002879 mRNA downstream 81170 5304911 ~ 5315169 (-) True AMCG00002879
AMCG00002876 mRNA downstream 99137 5289680 ~ 5297202 (-) True AMCG00002876
AMCG00002875 mRNA downstream 120264 5262750 ~ 5276075 (-) True AMCG00002875
AMCG00002883 mRNA upstream 41821 5438380 ~ 5443809 (-) True AMCG00002883
AMCG00002890 mRNA upstream 199798 5596357 ~ 5597064 (-) True AMCG00002890
AMCG00002893 mRNA upstream 273553 5670112 ~ 5671942 (-) True AMCG00002893
AMCG00002894 mRNA upstream 299650 5696209 ~ 5712088 (-) True AMCG00002894
AMCG00002899 mRNA upstream 413579 5810138 ~ 5826278 (-) True AMCG00002899
TU174755 other downstream 1393535 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 1446171 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 2676920 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 4470941 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 4472105 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 1665914 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1952252 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 2534698 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3088802 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 3450473 8847032 ~ 8847840 (-) True G140006

Expression Profile