RNA id: TU175151


Basic Information

Item Value
RNA id TU175151
length 2084
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G139263
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5439777 ~ 5442279 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGAGTGTAAACTCGCACTGGGATCCCAAAAGCTCTTGCCAGCCCAAAGTCAGCAAGCTTTATTACTCCTTTGCTGTCAATCAGCAGGTTCTGTGGCTTCAGATCACGGTGAAGTACTCTGCGACAGTGGCAGAAGAGGATGCCCTGCAAAATCTGGTATAAATAGCTCTGGAAGACAAAAACATCCACTTTAACATTACACGTATAACCAAAGTGAAACGAACATTTCAGATCCAGCGcccacacattacacacacaactGGCTTGAGTTGTACTGTACCTTTACAAGCATGGGCTCCATATACTGGCCAGAAGGTATTGAATCCAGGTATTTCTTCAGGTCCATAGAGAGAAACTCAAAGATGAGGTAGAGCCTGGAGTCCTGCATCAGCACGTCCAGAAGACGGACCACGTTGGGGTGCTGCAGCTCTCTCAGCAGGGAGATCTCCCTCACCGCCGTGCTGGGCACCCCCTCCTCCTCGCTCTCCAGCCGGATCTTCTTCATGGCCACCACCTGACCCGTGGACTTCTGCCGACCTTTGTACACAACCCCATAGGTACCCTCTCCAATTTTCTCAATCTTCACATAATCATCCATGGTTgtatcctaaaaaaaaaaaaaaaaaaaaacacaaaataacaggaAGACATTTACTGAAGAGGTGCAGTGGTGAACACTCAAGGTGAATAGATTAATTGTGCGCGATACAATTTGAACCATTTACAACCATCATATTGATAGTTACTTATTGCTCTGCAGGGCAAAAGGGACAATCTATCCTTAACGTTTGAGAAAAATGTCCTTTCCACGCCTGAGATTTTCAGTCACTTTGCAAAACACTCACATATACAGAATCAATCTCAGCAAgcctaaaaaaaacacacacacacatatatatatatatatatatatatatatccacacacacattttccataaaCCACCCTATtgtgcagtaaaatacaaatgcaagtTAAAATTTTACTGGTAGTGGCCGAGGCTTTAATTTTTTAGGATTAATATTAAGCTTCTTGCTtatccatggcgacttacaaagtataacattatatatatatatatatatatataaataaatctgtgttaGATGCAAGTTAAATACGTTGCTTTTTTCCTCTAAATGAGGGATGGCTTATTGTGTTCAGTCGACTTcctacattaaaatacatctgaTTGTGCAACGTAAACCACAACTAACAGCTCATCTTCCTCTCATTATCTATAGGATGCTTGTGCAGCAGTAACACCTCAGTGATTTAGGCAGCAGGACAGGCTATAATAAGTGAATAAGACGGGATTTCTCTTCGTTAACACACTCACGGTGTGTTAATATTGTAACAccgcagacacagggccagttTTGACAGCTGCCCtcataaacacatacactcatactcctatatatgcatattttatagttttggGCCATTTTACCCGGTGTGCAAATACACTGTCTCACTAacacgtttttgtttgttttgcatacGTTGAATATATGTTAATTGAAACAGTAAAGTAgattatgtgtatgtgtatatatatatatatatatatatatatatatatggacagcAGTATAGGTCGAGGCTCTTAGGCCTTCCCTTCCACCCGCCGGCTTTCAACACAACATCCGGGTAACCTCGCCCAGACACCCGACAGTAAGTCAGTTTTATTATACACATTAAAACCGGAGTTAAATTAGATATTTCACAGAATTGAAATTCAAAGTGTATAAAACCTTGGAATGTGATTATAATCGACTTGACTAGAAACCCATATTTCTAGTAGTCGTGCGGTTCTAAAATGGACACAAAAACCATCAATTGTTcgaaaatataaatgaaaacatcgTCATCTGCAATTTACACAAATGCTAAACAATTATATAGATTAATAGAGCGataaagtgaataaataccCTGTCCCAAAGCTGCACCTCCTGGCTCGTCCTGGTCGTTGCGGGGAATGGGCTGCCTGCGCTTTCAAACCGGCCGCGCCGCTGCCTTTCAAATCCAGCCAATCAGGGCCGCTCGCTTACTTTCAAAAGAGCCAATCAGGAGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175122 lncRNA upstream 73094 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 200287 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 370882 5067472 ~ 5068895 (+) True G139170
TU174942 lncRNA upstream 637533 4798613 ~ 4802244 (+) True G139084
TU174889 lncRNA upstream 726952 4626657 ~ 4712825 (+) True G139044
TU175250 lncRNA downstream 375773 5818052 ~ 5819125 (+) True G139351
TU175425 lncRNA downstream 695842 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 752332 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 755991 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 757080 6199359 ~ 6199856 (+) True G139505
AMCG00002880 mRNA upstream 3863 5418675 ~ 5435914 (+) True AMCG00002880
AMCG00002882 mRNA upstream 53348 5383852 ~ 5386429 (+) True AMCG00002882
AMCG00002881 mRNA upstream 56084 5380613 ~ 5383693 (+) True AMCG00002881
AMCG00002872 mRNA upstream 154705 5276915 ~ 5285072 (+) True AMCG00002872
AMCG00002871 mRNA upstream 205950 5231982 ~ 5233827 (+) True AMCG00002871
AMCG00002888 mRNA downstream 95211 5537490 ~ 5616805 (+) True AMCG00002888
AMCG00002884 mRNA downstream 176948 5619227 ~ 5638109 (+) True AMCG00002884
AMCG00002885 mRNA downstream 201096 5643375 ~ 5651423 (+) True AMCG00002885
AMCG00002889 mRNA downstream 211523 5653802 ~ 5655220 (+) True AMCG00002889
AMCG00002886 mRNA downstream 216158 5658437 ~ 5665972 (+) True AMCG00002886
TU175054 other upstream 341033 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1409853 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1843669 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2323696 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2945183 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 705469 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1624664 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1934408 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2480903 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 2595298 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile