RNA id: TU175429


Basic Information

Item Value
RNA id TU175429
length 1979
RNA type TUCP
GC content 0.45
exon number 2
gene id G139492
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6147748 ~ 6153120 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATTCACTGGGGAATCCGAAgtgttgcttcaactgaagcattgtaccttaacaaaTGGGGGCTCGTCTGGGATACAATCAGgTAAAAGCTGCTCAGACTGAACCAGCCCAGCAGGACTGTCACCCATTCCAACCAGGTGACTGTGTACATCAAAGCACACAAGAGAAAGTCCTCCCTGCAGCCCAGGTGGACAGGGCCCTACCAGGTGCTGCTGACCACCCACGCAGCTGTGAAGTGCCAAAGGGAAACAACACTGGTGGAGACCAGAGGGATGCTCTCCTTTactcctggatcctcttccTCGCTGCCTGCAGGACCATCGTCTGCACCATAACAGCCAAAGGACGTCTTCAGTGCCCAGCCAATGGGATCATCGCGGACTGAGGAAATCAGTCCAGAAGCAGCtgacatcatcatcaacctCTAGATAACGAGGCCAGCGCAGGGCCAGAGCAGTGGCCCACAAGGAGTAGCCGTACGCACGAGTCCACAAATACCGGGTGATGTGCTAGTAACCTCTCCCCTTCCACATATTGACATCACAGACACTAACACTTACACTGATCAAACACAACTGAGGATTCGACAGGGACAACAAAGCCACCTGACCAGAAGAAACACCTACAACCCCAATCGAGGAACAGTGCTGAATCCTGATGATGGCCGAGGTCGACCTTACCCTTCTGATCATTGCCCTGACGGCTCTACTGGAGCGATCCAGCTCAATTGAATGCCAACAATTCAACCACTGTCCCACGGTGGGACACAAATAACAGCTGCTCCACCTCCCTGAAGAGAGAACAAAAGCCTTGCTTGCTGCATTCAAGAAATGCATGGTGGACGATATGTAACTTCACTGCTAGACAATGTACTAATGAATCATGTTATATATGCACTGCTATTCAGATGGTCTTTATATTGCCTTAATTGACAGTGAGAACCATGGACGGCCTCCTAAAAGGCCAGATCATACGAAAAGACACAAGAGGGCTTCGTTTGACACATCAGTATATGCCATACCTGAAGAACATCGCCTCACATATAGGGCCAGGAGATTCTGGACCTCTGTCTTATCTTCCTTTGGCACTGTGCAGCAATGGCACAttattgaacatttacattatagaTTAGCGCAATTTACAATGACACAATAACAGCTCTTGAAGCTATTAACACTAAAATAACAGTCACATGCCTCATGAAAACTCAGAATTGCTTGATCTTAGATGTGCCCCTTGCTAAGGAAGGAGGTGTGTGCCATATTGTTGGGGATCACTGTGTTTACAGAATCTGATCAAGAGGGCTTACTTTGTGATTAACATGtccaaaatgtctttttatatcTAATGGTTGAAACAACTTTTCGCAATTTTACGaaattaatgtaacatgttcatgtttcatTAAAGAGGGCAACTGTTGGGGTACAATTGTtttccagtaagatactagttaaaacttgctcttataagggtttctttgttcttatttctctgctcagacttatctgtgtggcagattgAGATAGTTTACTGCCGTAAACATTCCTTACGTAAcgaactgaaaatatatatatatatcacattctaatcagtacagtgtgtgctgtgtccttggtaccagtgcctccatgtctggatgaaatattgttttcccgattataaagaataccttatcaattatttcttcccgtgtctcggaactgacccgggacatatgccaagaaaatatcattcAGGTTCGGGACTGCCccgaacctcctttgaaatgttgcttgtagatgtataaaaggctgtgtgaaactttcaataaacgaagataaatgaacagacattgtgtcagtgactttacttcccgggcctgtctcctgttgaaaagcctcatctgttactggaagcgctcactgggatgcctgattcactggggaaTCCGAAgtgttgcttcaactgaagcattgtaccttaacacctgcagacac

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175425 lncRNA upstream 7077 6138121 ~ 6140671 (+) True G139488
TU175250 lncRNA upstream 328623 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 705469 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 781065 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 908258 5239350 ~ 5239490 (+) True G139205
TU175436 lncRNA downstream 41491 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 45150 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 46239 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 48083 6201203 ~ 6201470 (+) True G139506
TU175448 lncRNA downstream 49724 6202844 ~ 6203059 (+) True G139507
AMCG00002910 mRNA upstream 15529 6117729 ~ 6132219 (+) True AMCG00002910
AMCG00002908 mRNA upstream 37236 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002911 mRNA upstream 55682 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002904 mRNA upstream 108840 6020258 ~ 6038908 (+) True AMCG00002904
AMCG00002903 mRNA upstream 131503 6011828 ~ 6016245 (+) True AMCG00002903
AMCG00002909 mRNA downstream 4653 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002916 mRNA downstream 36244 6189364 ~ 6193500 (+) True AMCG00002916
AMCG00002917 mRNA downstream 56608 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002918 mRNA downstream 75067 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002915 mRNA downstream 102050 6255170 ~ 6266600 (+) True AMCG00002915
TU175054 other upstream 1049004 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2117824 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2551640 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3031667 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 3653154 2492086 ~ 2494594 (+) True AMCG00002784
TU175613 other downstream 913823 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1223567 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1770062 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1884457 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 3148492 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile