RNA id: TU175436


Basic Information

Item Value
RNA id TU175436
length 2420
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G139498
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6194611 ~ 6197030 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCTGCTATAACTAAAATTTATAACAATCCTGAggtaaataatattcaaatgggactttttaaaattcagaacCACTTGCCATGTGATTTCTCCTTTTGATAAAGAGCCCTgccatatttaatacattcaacACAATGCAGCActtatttgtttcttagcagCTAacacctttttcttttaaatacaaacaaagtgACCATTCAGGTCTAGAAATACGATTGAATCAAAAACCCGGCCTATTCTACAAGCCCGTTCTGCTTTTTACCTCCCTATTTTCCGTTAAGCTGTTTATACCACTCCAGCTCAGTCCTATTGTCTGTGCAGTCATATTTTGAGAGCAAATCAGTCTTTGTTGGTGAGAAATCCAAATCCCAAAATAGAAATCCTCCCACTGcacatgaaattaaatacttCCTCCTGCCGCAGATTCGTCTCCTCGGGCCAACATGAAATCGATCGGCACAAAACAATCCTTTAGATTCTGATGATCGCTAAAGACCACGTCCGATTTGAACACTATAACGAACACAAGGGTTTAATCACACATCCACTCAGTTGTGAAAGCCCAGCGCCCTGCATCGGCCCGTCAACGTGAAATCCAGATGGCGGCCCCTGCAGGGAGAGCTCGGCTGAGCGGCGGGGTGCGTTGTTTGCAGTGAGCCTGCAGGGTGTAAGGCATAGGTGAGGACTGATCTGGCAGCATTCCCCCAGCACCGGTTTACATGCATGGTAAATATGTACTTTATAGGTATTTCTTAACTGGTTCAGAGTTGTGATTGTGCTGTGGGTGCAGGGGGACTTGACTTGACATTACTCCAGGCTACACAGACTTTCCAGCAGCAACACAAACTACACAACAAAGAGATCCACTGCAGTTTTCTTCGGTTTACATTACACACGTGGgttgcattttttccccccactacTCAGCTTAAGACACCACGAGACATAAGtgtcaattcattttttattattaaaacggTGGTAGAAGATGATACTGTGGTTGGATGAtctgtattcatgtttattaCCTCCTGGCCATCTCTGTCCGCGGTTTCTACCTCCACACCGATCCACAGCTATGCGAATATAAACTGTGCCACTGGACAAGATTCACTGTCACTGGATTTGCAGCTTTAGTCgcacaacacatttacaataaatagttaaaaaaacGAGAAGCAAGAGCACTTGTAAAAGTGTGAGGAGCCCAGAGCACAGGACTCCGCAAAACGCCACGGGCCCCTCCACTCGCTGTAAGGCGTTTTGTGTTCGCTAGCCTGTTACATTCAAAGcaatttttggttttaaatcccAAAACAGACAATTGGCTTCTTATTGTGATGCTTTGTTTTCACACATTCCCACTCCTATCAAGAGAAGGTCTACTATACTTCCCCATATCAAGCACGACTCCATTAGAGGATCCTTCTCATTGAACTTACAGTGCATTTCAATGTAAACAACGGAACCTGCACTTGCTGATAAATTCAGAGTTGTACAGCAATAACACGTGCtagaagaaaatattattaagCATTTAGTTATTGAAGTAAATTTAGTTGGTTAGtaagcattttatatattactaCCACCAAAGAGATTAAGGACACAAGTATACCTTTCCAGAATTCAACTGTACAAAAGTGTACATCCTTGCAGGGCTGTAACTGAATACGTCTCTATTGAAGACAAGCATTGTTGTCTctgttaaaaaggaaacaaaatccaGTCACCGCAGGTTATGTTTATAAATGCATCAAGTGTCATGCACTATAATGCCGTTCAGAATATAAATTGTAGTTGCTTGTAAAACTCAGTTTGTGATTTCATTCCCTATTAAAACTGTTTGATCACTCCCATTGGGTTACACATTAGAGATAATAAGCATAAACTTACTTTAATGCAAGAGGGGTAAAGAATATTGTAACCCAGATATGCAGAACATATTGTTACTGCCTACACATTGTTGGCCTTTTAAGGggagtttttctgttttcatttaaaatgtcacaccTCAAAGAATTTCAGTGTAAAGGTTTTCCCCTTTAAAAACGGTCTTCTCAGTAACTGAGGCATGCTGTGTCAAGACTAATGATTTGAGTTCAGGGTGCAAAGCCACTGAGTACAAAGcgagaataaaatcaaattaactCACCATTATTGTACAGCTTAAAGCTCCACAGTGAATGTTCACATCATTCTTTACTGCAAAGCAATAGCAATTCACAgtacttttgaaaaaaataaataaatacaaaagccTTCAAGTTAAcaaagatataaatataaaactatccACTCCAGCTGTGTGTGGTGGCGCAGTGAGATGGCCtactgggggggagggggtcctTCCTGTCACCTCAGGTCCAGGACTGTTGTCTTCATGTCCTTCACCACAACATGTTTACATAT

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175425 lncRNA upstream 53940 6138121 ~ 6140671 (+) True G139488
TU175250 lncRNA upstream 375486 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 752332 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 827928 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 955121 5239350 ~ 5239490 (+) True G139205
TU175445 lncRNA downstream 1240 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 2329 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 4173 6201203 ~ 6201470 (+) True G139506
TU175448 lncRNA downstream 5814 6202844 ~ 6203059 (+) True G139507
TU175484 lncRNA downstream 100704 6297734 ~ 6311270 (+) True G139531
AMCG00002916 mRNA upstream 1111 6189364 ~ 6193500 (+) True AMCG00002916
AMCG00002909 mRNA upstream 36044 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002910 mRNA upstream 62392 6117729 ~ 6132219 (+) True AMCG00002910
AMCG00002908 mRNA upstream 84099 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002911 mRNA upstream 102545 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002917 mRNA downstream 12698 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002918 mRNA downstream 31157 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002915 mRNA downstream 58140 6255170 ~ 6266600 (+) True AMCG00002915
AMCG00002921 mRNA downstream 123106 6320136 ~ 6329764 (+) True AMCG00002921
AMCG00002925 mRNA downstream 200427 6397457 ~ 6409095 (+) True AMCG00002925
TU175429 other upstream 41491 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1095867 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2164687 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2598503 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3078530 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 869913 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1179657 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1726152 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1840547 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 3104582 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile