RNA id: TU175445



Basic Information


Item Value
RNA id TU175445
length 233
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G139504
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6198270 ~ 6198502 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGACAGCTCAGTGAAGTAAACTATATAGCTGTTGCCATGTTAGAAATGAGGACGCTAGAGCAGAAATGGCCCAGACTCACATGGATCCATCCTAAAGTGAGGAGGTCGTGCTGATCCTGAAAGCTGAAGAGCTCTTCCACGTTCTCCATGTCACAGTAGTCGGGACCCGCAGACTGCTTGGGTATGATAACGTGGGTGATCATGAACTCATTATGAGTCTGCCGGACCAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU175436 lncRNA upstream 1240 6194611 ~ 6197030 (+) True G139498
TU175425 lncRNA upstream 57599 6138121 ~ 6140671 (+) True G139488
TU175250 lncRNA upstream 379145 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 755991 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 831587 5366435 ~ 5366683 (+) True G139238
TU175446 lncRNA downstream 857 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 2701 6201203 ~ 6201470 (+) True G139506
TU175448 lncRNA downstream 4342 6202844 ~ 6203059 (+) True G139507
TU175484 lncRNA downstream 99232 6297734 ~ 6311270 (+) True G139531
TU175539 lncRNA downstream 219936 6418438 ~ 6418798 (+) True G139573
AMCG00002916 mRNA upstream 4770 6189364 ~ 6193500 (+) True AMCG00002916
AMCG00002909 mRNA upstream 39703 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002910 mRNA upstream 66051 6117729 ~ 6132219 (+) True AMCG00002910
AMCG00002908 mRNA upstream 87758 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002911 mRNA upstream 106204 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002917 mRNA downstream 11226 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002918 mRNA downstream 29685 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002915 mRNA downstream 56668 6255170 ~ 6266600 (+) True AMCG00002915
AMCG00002921 mRNA downstream 121634 6320136 ~ 6329764 (+) True AMCG00002921
AMCG00002925 mRNA downstream 198955 6397457 ~ 6409095 (+) True AMCG00002925
TU175429 other upstream 45150 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1099526 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2168346 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2602162 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3082189 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 868441 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1178185 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1724680 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1839075 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 3103110 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile