RNA id: TU175723


Basic Information

Item Value
RNA id TU175723
length 2801
RNA type TUCP
GC content 0.41
exon number 1
gene id G139720
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7376687 ~ 7379487 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taTGCCTACACATTTCaggtttaattatttacattgtaaatatgaacatatttacagtttccatttcGTATATTACAACTTTGCATTCTGGAAATTGTAgtatctaaaaaataataaacactgaatACAGACACTCTGGTACTGAAACTCAGGATTTAATttgatacattacattttaagtaatcCTAAGTGTTTCAGAGATTAATATGACATATTGCATGTTTCTAATAGCAGCACACACCAGGCAAGATGGTTACAGCGTACAatattgttaaagaaaaaaaaaacacgttggTTTTCTTCGTATGAATACGAAAACATGTGACacttatatacagtatttaatatttatttctgtttaggTCCctgaatatgcaaatatatttttggaatacatatatatttatttaactttttacaatgatatacaatatttatgcaCACACCTTTAACTTTATTAAACTTTGCACAATACTCCAATTATACGTCTAGGTGGATGATGTTCTTACTACAGACTTGTTcaaatactattaaaaaaatattcattgCTTTACGGAGTTCTTTTGGAAGAaactgatgaaaatgaaatctgGAAGTAACTAGTTACACAATCATGATAAGGTAGGGTACATCTTATATTGCACATCGGTACATAACATGGTACTGATCCAACAGTCACAAaaactggtgtgtgtgtgtatgtgtgtgtgtttacagtttttatagtttttaatattttaactgtattcTGGCCCAGAAGAGTCCTCCTCTGAAAATGACCTACTTGTCTGTTGCCCTTTAAAAGTTTCAATACCATTCTCATCAGAAGGCATGCAGTTGCCGGCTGAACTAATAAAGCCCTTCTTCTTTGAATTGCGCTCTTCCATCTTTATGGTGTCGTACAGCCCTTTGGGTCCCTCTTCCAGAAGGACGTTTCTCTCCGAGTGAGAGGGTTTCATTTGGCACACGTTTCGGAGAAAAAGCAGGGCAGGTGCATAAAGTACATTGACGAGGCCCATACCCAGATTCAGTTGCACAAAACCAAGGTCGTGGACAATCTGCCCTGCCACGATGGGTCCCAGGGCATAGGCGACAGAGTAGGAGATATCTGCGATAGCATAGACACTGCCGTATACTGAAACATAACGTATGTCTACTAGAAAGGCGAGGGTGGGCAAGAGGGCAGTGTCCACGAGAGCTATGCCAAAGCAAATACCACACAATGGGGCAATAAGCTCTCCAAAGTTCCTACAAGCTGGTACAGTGCAGGAGCTTGCACCAATGATGACCATACCTAAAGCTCCGTAAAACCATTGATAGTTAGGGTATTCAGCAGCTAGTTTAACAGTAATATAAACACCTAGAACATGAGGGAAAAAAGCTGGCAACCAAATAAGTCCCATCTCCCATTTGGTGGCATTCATAGTGGATTCCATCCAGTTGGCAATTGTGGGCTCCAGGAAGGCCAAGGGGATGTTGCATGTTGTCAAAGCTCCTGCCACCACAGCAATATATGGGTCAATCATGAGTCTGTAAATGGGGGTGCCTACCGGCATGTTTTCTCTAGTCCTGTTACTGAAAGGTTTTATAACAGTCAGCAACAAGATGCCGTCTATTAGGCAGATACAAGCAAGAACAATGAATGGAACTCTTTTCCCTGCGAATTCGTATAAAATACCTCCAAAGGGGGGCGACACCAGGCTTCCGAAGGAGATGAAAGCCAGCGCAATGCCAAGGGCTTTACTTCTTTCGGACTCTTCTGTGTATTTGTCAGCTATCATGGCAATTCCAGACGTGTCAGCAAAGGCTGATCCCAGACCTTGCAAACTTCTCGCAATGAAGAGAGTGGCATAGTTTTCGGCAAAGGCAAATATACAGgtagaaaaaaacatgacagttAGTCCTATTAAAAGTGGGATGTCGTACCCAACTCGGTCTATGAAGGTTCCGCTCAAGGGGTTAACTAGAAGCTGTAGGATAGCTTTCGATGCAAACAAAACCCCAATTTGTACATCTAAGTTGTCCTTGGTGACTTTACCTTGGCTGGTACTGTTGATTGAAGAACTTGAGTTGACTGCTACATGGGCTTGCTCTGGTTGATCACCTTCTAAATAAGCAAGGTAATCTGGTATAATCGGCACAATAACCATATAAAGCATATTGTCTAACAGGAGTGCTATGCAGACAATTACTAAAATCATGCGTCTTTGTCGGTGAGGATCCTGCATAGCGGTACCTAACCGTTTAGTTCTTTCGCCCATCTCTGATAATTTCACTGCGGCGGATTTAGCCAGCCCGGGCGATCCCTCTGAAGCCATGATTCCCTCTACTTTCAAGAAACTTTCCTCttcacagcagcacagacaaACCTTTCTTTTACACTGAACCGATATAGTACtttctgtacatttatattCGCTTTTCGTGTGCTAAAGTCCTGTGATGCCAGCGCACTTTTCCCCTTTACCTGTCTCTGTGACAGTTCTGCATAGCCCTCTCCTCCCCTCAGCCTTGACTTGACGCGCAGTGATGCATCCTTGCTATCCGGGGTTATTTCATGGTTTCTTATCCCGTCAGAAGAAGTCTACTTTTTTCTCCAAGTTATGGGTTTGCCTGTGTATCCTCCATATCAATAAAGGAGTCTGTTAAGTTGAAAGTCCTGATGAAACCCGAGATGCGTGCGTCCGAAATGCATGTCTTCCACCACCTGTAACACTGCGAGGTATGTTCTCGTCTGAGATCAGCAATCCTGGTTTTGTGGCCATTGGCACGGTTTGCCTCGCATGTTTGTTGATTCTTTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175654 lncRNA upstream 179590 7196878 ~ 7197097 (+) True G139667
TU175640 lncRNA upstream 223948 7152537 ~ 7152739 (+) True G139656
TU175612 lncRNA upstream 310313 7062523 ~ 7066374 (+) True G139633
TU175611 lncRNA upstream 311222 7062523 ~ 7065465 (+) False G139633
TU175538 lncRNA upstream 953519 6420166 ~ 6423168 (+) True G139572
TU175809 lncRNA downstream 529862 7909349 ~ 7910999 (+) False AMCG00002960
TU175856 lncRNA downstream 573639 7953126 ~ 7953340 (+) True G139827
TU175863 lncRNA downstream 618726 7998213 ~ 7999259 (+) True G139832
TU175867 lncRNA downstream 623315 8002802 ~ 8003057 (+) True G139836
TU175868 lncRNA downstream 623828 8003315 ~ 8003645 (+) True G139837
AMCG00002942 mRNA upstream 29739 7313942 ~ 7346948 (+) True AMCG00002942
AMCG00002944 mRNA upstream 65763 7271927 ~ 7310924 (+) True AMCG00002944
AMCG00002943 mRNA upstream 108809 7225789 ~ 7267878 (+) True AMCG00002943
AMCG00002940 mRNA upstream 186882 7166518 ~ 7189805 (+) True AMCG00002940
AMCG00002937 mRNA upstream 224523 7132176 ~ 7152164 (+) True AMCG00002937
AMCG00002946 mRNA downstream 32622 7412109 ~ 7425081 (+) True AMCG00002946
AMCG00002949 mRNA downstream 109884 7489371 ~ 7500590 (+) True AMCG00002949
AMCG00002952 mRNA downstream 315872 7695359 ~ 7733537 (+) True AMCG00002952
AMCG00002955 mRNA downstream 433022 7812509 ~ 7821463 (+) True AMCG00002955
AMCG00002959 mRNA downstream 448604 7828091 ~ 7829718 (+) True AMCG00002959
TU175613 other upstream 303151 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 1223567 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 2277943 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 3346763 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 3780579 3428689 ~ 3596108 (+) True G138888
TU175799 other downstream 543695 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 658090 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 1922125 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 1946001 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 2398763 9778250 ~ 9780452 (+) True G140189

Expression Profile