RNA id: TU175799



Basic Information


Item Value
RNA id TU175799
length 481
RNA type TUCP
GC content 0.53
exon number 2
gene id G139784
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7923182 ~ 7926832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGGGTTTGACGCCGGAGCGCTGAGGTGAAAATGAAGTTCCCTGATGTGAGATCGGGCATGTCTCGGGGCCGGTGCGGACGGGGATCTGGTCGTGAAGAGATCTTGGATCCTCGGCCACAGCCCACCAGATTCCAGCCTCAGAACCAAGGTCAGCTGGAAGGTAGGGACAAGGAAAGGATCCACTGCAATCTGCTCCACACTCTGGCAGACATTTCCCTGCTCCACATACAAGTCAATAAGTGCTCCTCTCAAGCCACAAGGCTCGCTGGCTGCCAGATGAAGCAGCTCCTGGCCTATGTGCGCCATTAGCTGGTCAGGGATGAGAAGTTTGGAGCATTTCAGAGCACCGTTTTTCGCTTCAGTCAGACTGCATCCAATCAGGTCCACCACCTCTGTGCACAAGGTCTCCTCTAAGGGATCAAAGAACAGATCTGACTCGGATGTGGAAATTTGGTCCAGGACATCGGATCCTAAATAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU175809 lncRNA upstream 12183 7909349 ~ 7910999 (+) False AMCG00002960
TU175654 lncRNA upstream 726085 7196878 ~ 7197097 (+) True G139667
TU175640 lncRNA upstream 770443 7152537 ~ 7152739 (+) True G139656
TU175612 lncRNA upstream 856808 7062523 ~ 7066374 (+) True G139633
TU175611 lncRNA upstream 857717 7062523 ~ 7065465 (+) False G139633
TU175856 lncRNA downstream 26294 7953126 ~ 7953340 (+) True G139827
TU175863 lncRNA downstream 71381 7998213 ~ 7999259 (+) True G139832
TU175867 lncRNA downstream 75970 8002802 ~ 8003057 (+) True G139836
TU175868 lncRNA downstream 76483 8003315 ~ 8003645 (+) True G139837
TU175869 lncRNA downstream 77072 8003904 ~ 8005450 (+) True G139838
AMCG00002960 mRNA upstream 2274 7909252 ~ 7920908 (+) True AMCG00002960
AMCG00002954 mRNA upstream 59761 7847978 ~ 7863421 (+) True AMCG00002954
AMCG00002953 mRNA upstream 77312 7843544 ~ 7845870 (+) True AMCG00002953
AMCG00002959 mRNA upstream 93464 7828091 ~ 7829718 (+) True AMCG00002959
AMCG00002955 mRNA upstream 101719 7812509 ~ 7821463 (+) True AMCG00002955
AMCG00002961 mRNA downstream 11600 7938432 ~ 7946524 (+) True AMCG00002961
AMCG00002966 mRNA downstream 28384 7955216 ~ 7998025 (+) True AMCG00002966
AMCG00002965 mRNA downstream 111843 8038675 ~ 8044413 (+) False AMCG00002965
AMCG00002974 mRNA downstream 144152 8070984 ~ 8081794 (+) True AMCG00002974
AMCG00002973 mRNA downstream 209908 8136740 ~ 8172504 (+) True AMCG00002973
TU175723 other upstream 543695 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 849646 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 1770062 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 2824438 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 3893258 4029524 ~ 4029924 (+) True G138941
TU175890 other downstream 110745 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 1374780 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 1398656 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 1851418 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 2828069 10754901 ~ 10756840 (+) True G140478

Expression Profile