RNA id: TU175947


Basic Information

Item Value
RNA id TU175947
length 3410
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G139902
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8230369 ~ 8234284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGATCACGATGTGACTGTTTCACCAAACTTGCATACACTACTGTACTTTGTTACAACCATGTAGCTTGTAGTTCtggaattacatttatatttgtaatgcctgtcttttaaatgcataaaaataaataaaatgttcaatgttAATCATCACAAAGTGTTATAAAAATGGTTCTTGCATTGCTTAAAAATATACCTGTTGCGACATCTAGTGGCTACAAAAAAGCATGGCATGTCAACATTTATTCTTTTGCTAAGGCAGTGTCTCTGGcacatgaaattaaatttaaataagtatGCGTCCATTGGCAATGAACATATTTTAACTGAAATGGACAGAAACGAGAcattgtacagttttttttacaatttatttgatgACAATATACAAGAACATCCTCAGCTCGAAGGCATCCCCTGAATATCCAAAATCACTGCAAGACAAAAGAGGTGAAAAATGttagttaaaaacaaactgctgaagggactttttttttttttttttttaaatcaagctttACATGCTTTACAACAGTTCAGTGAGATTACTAAAAACGGACAGATCTGTAGACAAGATTAATTTATAgtctaattgtattttatttattctgaataGTTTGACATGGGAAGCTTTCTCCCACCACTAACACCTAAACCAGACCTGCTTCTACAGGCTGTTGCTGTACGCCAAATCACTTACATTTCCCTGAAACTCTGTGACtcaatatgatttttaaatacaaagtgaaatagtgttttaatttaggAAACTAAGACCACACCCTTGTCTAACTCAAACTAATTTACATAATCAAGATTTAAAtcaatccaattaaaaaaaattaaggcaACTACCAATTCAAATTTGAACACTGTTTCCCTGTTCAACCCTCTAATTGTACATGTGCATTAATGGTGaccaatgtatttatacatgtattaaaatggCTCTAAACTGATCCAGGGATCTCAAGTGGGGTCTGTTGTAAAGTGTCAAGGGGAAAGTCCCGAAGCATTTTAACCATGCATTTAGGATGCTGTTCTAACCGTATGCTTTAACACACTAACACATTTGGCGAGTATTATACTGCATGCAATGCAGACAATGTCTTTAGTAGATTCTTTATAAACATCAAAGTAAAAAGTTGcttctttgctttgaatgcaaaattactgtaaatgtttcccaattttaaaaagggaaatctTTCCTACTCAAATAGATCTTTGCCAGTGAAGAGAAACTAAATGAGACATAGGCCTATATACAATAGTCTAAGAAAATGCATGTCCTTAAGATTAAATTAACTAAAGCTGTTACAGCAATTtcttaatataaatgtacatcGACTCCACTGCATGCCTCTTGAATCAAGGCCTCCAATATTCAATCTGTTGTTCAATCGAACATTTGAGATACCTAAAAAATAGCATGCAATTGAATGGATCTGAAAGATTGCTTATCGAGAACTTcttgtacactttaaaaatgcgAGTGTGTACTTAAAATAAGCCCTGATTCATTCTGACAACCCATTTCAGTAAATTAAGACAAGGGACCACAACAGCAAAGGAAAAGACTAAACATTTGGGTTAAGGTACAAAGGTGGGACATGCAGAGGAGTTTAACTGGGAATTTCAAACGATGTGCAAAATCAGCACAGCACACCATGCTAAACAATACCTGAAACAGAAACCTCATTtctggataaaaaaataaagcaacaaaacatGAGAAATGAAAGactgcatgtttgttttcttcatacaTGGAGTTCATGATTCTAGATGAgcacaaataaatgcacactTCACAATTAGACACCCTGATTACTCAAGGATTAGCACTTTTTGATCAAAGCACTGGAATAGTAAGTGTTTTCAGATAGATATTAGATATTGGTCAACCCAAAAGGCAGTCAATTTGGCGTTTCCTGAGACTGCTGTAAAACTATTAGTTTAAGCACTAGTGAATCTTTCACAGACATCAATTAACACAAGCTCTAACAAAATGGACTCAttcaagactagtgctaatccgGGGTTATGAACTAGATCTATGTCTACTGAGGAATGGGAATGTAAAAGGAATACAAGTTAGCCATAAGGACATCCTCTTGTTAGAAGTGATGCAGGTCTAAACTATAGGGGAGCTATTGAAGCTAGAGACCATGTATGGAAATAACATTTACTTTCTGATGTCCAGAAGGAAATAAAGGAGGAAAGATAATAAAGCGAATTAAAGTAACAGCACAACAAtgaggaaacaaaaaagcaacatgAGGATGAACATttatgaaaacactgaaatgttgcCGCCACCCATTACATAGTGTTTAAAATTACCATTCAGTCCtctaaatacattgaaaaagacAATCAATAACCTGGCAGGACGTAAGCCAATACTTATGCCCGTTTCTCTGAAACAGCAGCCTGTGAAGAACCACACTGTGGAGATTACCTTTTTGCCGCTCTGGCCAACATTTGCCTTGGCCGTCCCCCGGACTTTCTTCATTCTGTTCTTGCGTTCCTTGCGCTGTTTCCTGGAAGTCTTTTTCTTCTCATAAAGACCGTGCTGGCCAGCCTGTGCTTGGGCTCGTTCTTCTTGGCATAGTCCAACGAGTCGTAGACCATCGCAAAGCCGGTCGTTTTGCCACCGCCAAACTGAGTTCTGAAGCCGAAGACGAACACCACATCGGGGGTGGTTTTGTACATCTTGGCGAGCTTCTCCCTGATTTCTGTCTTGGGGACCGTTGCCTTGCCGGGGTGCAGGACATCGACAACCTACAAATCAGATTTTCACAAGGTTACTTTCACAGTGTAGGTTTAATTTGTACATCCCCCCACCAACACATTCAACTATTCACCCACCAAACCTGTCAACTACATCTGCATTGACATCAATCTCAGAGCGGTTACATTGAGCTCAAATGTTTCTACACCAAACAATTGCATTATTCAGGTTTGTTTTCATCCCCAGTTGGGTTTGGGTTGTATGGCACCCTATGGAAAGATTAAGAAGCGAtcaatgcttattttattgttcattattttaaaacccaCTAAAACACTTACCATTTGCTTCCTCTGAAGCAGCCGGTTTGTCATGAACTTCCTGGTCCTGATAGTCACTGTGTCGTTCTGGAGGATAGAGGCAATAGGGGAACATACTTTTTAGAGacttttatgtatatatgcataagAAAATTGGTTGACCAACAGAAACAGACCTCACTAATCAAGCTTGCATGCAATGAATGTGCCGAGTGAAGATCAATGTTATACAATTGCATGTAGTACAAAAGCActattaaatgataaaatatatcTACGCATCccataaaatctgaaaatgtacccAACATctaaagcatttcaaaacaaggcATTTCAGCATGGACAACAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175922 lncRNA downstream 48793 8181290 ~ 8181576 (-) True G139881
TU175906 lncRNA downstream 115124 8111025 ~ 8115245 (-) True G139867
TU175854 lncRNA downstream 283848 7946052 ~ 7946521 (-) True G139825
TU175760 lncRNA downstream 771878 7455544 ~ 7458491 (-) True G139752
TU175655 lncRNA downstream 1011177 7218869 ~ 7219192 (-) True G139668
TU176008 lncRNA upstream 260570 8494854 ~ 8495297 (-) True G139937
TU176035 lncRNA upstream 383151 8617435 ~ 8618101 (-) True G139960
TU176102 lncRNA upstream 615385 8849669 ~ 8850559 (-) True G140005
TU176104 lncRNA upstream 698486 8932770 ~ 8932969 (-) True G140007
TU176107 lncRNA upstream 916532 9150816 ~ 9156562 (-) True G140009
AMCG00002979 mRNA downstream 1240 8214896 ~ 8229129 (-) True AMCG00002979
AMCG00002980 mRNA downstream 27055 8198676 ~ 8203314 (-) True AMCG00002980
AMCG00002978 mRNA downstream 34477 8183455 ~ 8195892 (-) True AMCG00002978
AMCG00002981 mRNA downstream 53476 8174912 ~ 8176893 (-) True AMCG00002981
AMCG00002975 mRNA downstream 181935 8045215 ~ 8048434 (-) True AMCG00002975
AMCG00002986 mRNA upstream 271405 8505689 ~ 8508352 (-) True AMCG00002986
AMCG00002985 mRNA upstream 294911 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002987 mRNA upstream 335934 8570218 ~ 8570907 (-) True AMCG00002987
AMCG00002988 mRNA upstream 337304 8571588 ~ 8580373 (-) True AMCG00002988
AMCG00002993 mRNA upstream 676151 8910435 ~ 8967149 (-) True AMCG00002993
TU175851 other downstream 292128 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 877548 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 1164048 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4227565 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 4280201 3937764 ~ 3950168 (-) False AMCG00002828
TU176000 other upstream 251077 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 612748 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 1002374 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 2067516 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3406532 11640816 ~ 11647619 (-) True G140758

Expression Profile