RNA id: TU176008


Basic Information

Item Value
RNA id TU176008
length 352
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G139937
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8494854 ~ 8495297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaaattgttatttctaAACATGAGCCAGTGGAAAACAAACTTGAGAAATaccttaaatatatacatatttgaagtatttttattCACAGTTGCAACAAGTTTTGAAAATCAAAGTGGAGCTATTCGAGTTGTCCGCACTCGGTGATGACTATCTTCTTGGAAGTGCTCCCAGATCGAGATCCTAATTTTTCCACTTTTGAGATCACATCCATTCCTTTCATTACGTTGCCGAAAACGACATGCTTCCCATTCAAAGTCAGTTTTTGCAGTGCAGATGAAGAACTGAGATCCATTGGTATTTGGTCCAGCGTTCGCCATTGACAGAACACCTACACAAAGAGTTGGTGAAC

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175947 lncRNA downstream 260570 8230369 ~ 8234284 (-) True G139902
TU175950 lncRNA downstream 260570 8230369 ~ 8234284 (-) False G139902
TU175946 lncRNA downstream 263636 8230369 ~ 8231218 (-) False G139902
TU175922 lncRNA downstream 313278 8181290 ~ 8181576 (-) True G139881
TU175906 lncRNA downstream 379609 8111025 ~ 8115245 (-) True G139867
TU176035 lncRNA upstream 122138 8617435 ~ 8618101 (-) True G139960
TU176102 lncRNA upstream 354372 8849669 ~ 8850559 (-) True G140005
TU176104 lncRNA upstream 437473 8932770 ~ 8932969 (-) True G140007
TU176107 lncRNA upstream 655519 9150816 ~ 9156562 (-) True G140009
TU176112 lncRNA upstream 740725 9236022 ~ 9236302 (-) True G140014
AMCG00002979 mRNA downstream 265725 8214896 ~ 8229129 (-) True AMCG00002979
AMCG00002980 mRNA downstream 291540 8198676 ~ 8203314 (-) True AMCG00002980
AMCG00002978 mRNA downstream 298962 8183455 ~ 8195892 (-) True AMCG00002978
AMCG00002981 mRNA downstream 317961 8174912 ~ 8176893 (-) True AMCG00002981
AMCG00002975 mRNA downstream 446420 8045215 ~ 8048434 (-) True AMCG00002975
AMCG00002986 mRNA upstream 10392 8505689 ~ 8508352 (-) True AMCG00002986
AMCG00002985 mRNA upstream 33898 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002987 mRNA upstream 74921 8570218 ~ 8570907 (-) True AMCG00002987
AMCG00002988 mRNA upstream 76291 8571588 ~ 8580373 (-) True AMCG00002988
AMCG00002993 mRNA upstream 415138 8910435 ~ 8967149 (-) True AMCG00002993
TU176000 other downstream 258 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 556613 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 1142033 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 1428533 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4492050 4001650 ~ 4002804 (-) True G138932
TU176103 other upstream 351735 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 741361 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 1806503 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3145519 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 3198709 11694006 ~ 11733762 (-) True G140757

Expression Profile