RNA id: TU176035


Basic Information

Item Value
RNA id TU176035
length 338
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G139960
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8617435 ~ 8618101 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCACAAAGACCCCACTTTCCAAGCTGATTCCACTGTCTTTGTGTCCAACAAGATTAATATGAATAGGTGTAACAATTCGTCCACCCAAAGACTTTCGTCTGCGAACGACCATATTAATCACTCCTCCTCCATTGAGCACAGCTTTGATGACCTGCTTCCTGTCCTTGTTAGTGAGGTCCACATCATTAATTTTCAACAACCAATCATTCACTCTCAATCTTCCATCTGCAATACTTCCTTTATCCACCTTAGTTACAAATATTCCACAATCTCCTGGCAAATACGGGTCATTTACCCCTTCGGCCACATCAAACCCAAGTGCTTTCAAATCCATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176008 lncRNA downstream 122138 8494854 ~ 8495297 (-) True G139937
TU175947 lncRNA downstream 383151 8230369 ~ 8234284 (-) True G139902
TU175950 lncRNA downstream 383151 8230369 ~ 8234284 (-) False G139902
TU175946 lncRNA downstream 386217 8230369 ~ 8231218 (-) False G139902
TU175922 lncRNA downstream 435859 8181290 ~ 8181576 (-) True G139881
TU176102 lncRNA upstream 231568 8849669 ~ 8850559 (-) True G140005
TU176104 lncRNA upstream 314669 8932770 ~ 8932969 (-) True G140007
TU176107 lncRNA upstream 532715 9150816 ~ 9156562 (-) True G140009
TU176112 lncRNA upstream 617921 9236022 ~ 9236302 (-) True G140014
TU176115 lncRNA upstream 619767 9237868 ~ 9242987 (-) True G140016
AMCG00002988 mRNA downstream 37062 8571588 ~ 8580373 (-) True AMCG00002988
AMCG00002987 mRNA downstream 46528 8570218 ~ 8570907 (-) True AMCG00002987
AMCG00002985 mRNA downstream 74475 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002986 mRNA downstream 109083 8505689 ~ 8508352 (-) True AMCG00002986
AMCG00002979 mRNA downstream 388306 8214896 ~ 8229129 (-) True AMCG00002979
AMCG00002993 mRNA upstream 292334 8910435 ~ 8967149 (-) True AMCG00002993
AMCG00003001 mRNA upstream 656112 9274213 ~ 9281237 (-) True AMCG00003001
AMCG00002999 mRNA upstream 666448 9284549 ~ 9298719 (-) True AMCG00002999
AMCG00003000 mRNA upstream 707358 9325459 ~ 9346898 (-) True AMCG00003000
AMCG00003006 mRNA upstream 753272 9371373 ~ 9384002 (-) True AMCG00003006
TU176000 other downstream 122839 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 679194 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 1264614 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 1551114 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4614631 4001650 ~ 4002804 (-) True G138932
TU176103 other upstream 228931 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 618557 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 1683699 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3022715 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 3075905 11694006 ~ 11733762 (-) True G140757

Expression Profile