RNA id: TU176092



Basic Information


Item Value
RNA id TU176092
length 263
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G139997
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8920468 ~ 8920730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCCACTTTTCTTTCTGCCAGCTTTTTCAAACATCATAGCCAGTCCTTTTAATGCAACTGACAGGGGGTTATTTGCTCccatatatgttttttctccaATTACAGCATGGCAGCTGCTTGCTGCCAAACAACTTGGTGCTATTGATGGTCATCTGTGTGAGTCGTCCTTCCTGATTCTCAACActatatttttcttcctttacttttctttaagGAGACTGTCATTTTGCTGTCTTTATTTCTATGTGTTATTCAGCACGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176090 lncRNA upstream 68782 8850179 ~ 8851686 (+) True G139995
TU175986 lncRNA upstream 377185 8542727 ~ 8543283 (+) True G139919
TU175985 lncRNA upstream 384094 8536080 ~ 8536374 (+) True G139918
TU175984 lncRNA upstream 411985 8507877 ~ 8508483 (+) True G139917
TU175982 lncRNA upstream 413365 8499384 ~ 8507103 (+) True G139916
TU176093 lncRNA downstream 12020 8932750 ~ 8932969 (+) True G139998
TU176094 lncRNA downstream 38009 8958739 ~ 8960425 (+) True G139999
TU176097 lncRNA downstream 225571 9146301 ~ 9146572 (+) True G140002
TU176111 lncRNA downstream 322401 9243131 ~ 9243842 (+) False AMCG00002996
TU176280 lncRNA downstream 809918 9730648 ~ 9730863 (+) True G140156
AMCG00002992 mRNA upstream 102504 8794807 ~ 8817964 (+) True AMCG00002992
AMCG00002991 mRNA upstream 150392 8739738 ~ 8770076 (+) True AMCG00002991
AMCG00002990 mRNA upstream 278030 8641915 ~ 8642438 (+) True AMCG00002990
AMCG00002989 mRNA upstream 285191 8584494 ~ 8635277 (+) True AMCG00002989
AMCG00002984 mRNA upstream 355852 8553579 ~ 8564616 (+) True AMCG00002984
AMCG00002994 mRNA downstream 233234 9153964 ~ 9156135 (+) True AMCG00002994
AMCG00002996 mRNA downstream 316010 9236740 ~ 9244099 (+) True AMCG00002996
AMCG00002995 mRNA downstream 348187 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00002998 mRNA downstream 379581 9300311 ~ 9316633 (+) False AMCG00002998
AMCG00002997 mRNA downstream 396001 9316731 ~ 9325141 (+) True AMCG00002997
TU175890 other upstream 876248 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 993636 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 1540981 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 1846932 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 2767348 6147748 ~ 6153120 (+) True G139492
TU176130 other downstream 380882 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 404758 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 857520 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1834171 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 2288843 11209573 ~ 11212111 (+) True G140613

Expression Profile