RNA id: TU176097



Basic Information


Item Value
RNA id TU176097
length 272
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G140002
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9146301 ~ 9146572 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCAACAAGTTAAAGCTCAGATCTAGTCGTCTTGCAAGTCCCCCATATTGTTCTCCCAAGAAGTCTGGGATTTCTTCACAGTCATGTCCAATATAAGAAACCTGTAAATCccatgtgaaaataataataatattattattattattattattattattattattattattattaattaaccaaaataaacaattaaggaAATATATCAActctagaaaaaaaaagtgtgaaatatGTTTGGCTTTTGAATCAACTGggtgcatatatttatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176094 lncRNA upstream 185876 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 213332 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 225571 8920468 ~ 8920730 (+) True G139997
TU176090 lncRNA upstream 294615 8850179 ~ 8851686 (+) True G139995
TU175986 lncRNA upstream 603018 8542727 ~ 8543283 (+) True G139919
TU176111 lncRNA downstream 96559 9243131 ~ 9243842 (+) False AMCG00002996
TU176280 lncRNA downstream 584076 9730648 ~ 9730863 (+) True G140156
TU176316 lncRNA downstream 620514 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 635362 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 641175 9787747 ~ 9788069 (+) True G140192
AMCG00002992 mRNA upstream 328337 8794807 ~ 8817964 (+) True AMCG00002992
AMCG00002991 mRNA upstream 376225 8739738 ~ 8770076 (+) True AMCG00002991
AMCG00002990 mRNA upstream 503863 8641915 ~ 8642438 (+) True AMCG00002990
AMCG00002989 mRNA upstream 511024 8584494 ~ 8635277 (+) True AMCG00002989
AMCG00002984 mRNA upstream 581685 8553579 ~ 8564616 (+) True AMCG00002984
AMCG00002994 mRNA downstream 7392 9153964 ~ 9156135 (+) True AMCG00002994
AMCG00002996 mRNA downstream 90168 9236740 ~ 9244099 (+) True AMCG00002996
AMCG00002995 mRNA downstream 122345 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00002998 mRNA downstream 153739 9300311 ~ 9316633 (+) False AMCG00002998
AMCG00002997 mRNA downstream 170159 9316731 ~ 9325141 (+) True AMCG00002997
TU175890 other upstream 1102081 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1219469 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 1766814 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 2072765 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 2993181 6147748 ~ 6153120 (+) True G139492
TU176130 other downstream 155040 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 178916 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 631678 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1608329 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 2063001 11209573 ~ 11212111 (+) True G140613

Expression Profile