RNA id: TU176112


Basic Information

Item Value
RNA id TU176112
length 281
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G140014
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9236022 ~ 9236302 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATCTGAAGACAATTGTTGTGCCATGTTGACCGGGTGCCCCAATGCATCTGTTGAACAGGCTCACTATACCAGCCTCCGTTTGTTTGTCTAAAATGGCTGCGGGAACGGAAGCAAAAAGTGCTgaataagatttatttatttatttatttatttatttattttttccagcatTGATTCAGCATTTCGCTGCTAAATCACTGTACACTGAGTGGCGTGCTACACAAACTTGAGACATTCAGGAAATGACCATTCAAACTGTATATGCTGATTGAAAACCTT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176107 lncRNA downstream 79460 9150816 ~ 9156562 (-) True G140009
TU176104 lncRNA downstream 303053 8932770 ~ 8932969 (-) True G140007
TU176102 lncRNA downstream 385463 8849669 ~ 8850559 (-) True G140005
TU176035 lncRNA downstream 617921 8617435 ~ 8618101 (-) True G139960
TU176008 lncRNA downstream 740725 8494854 ~ 8495297 (-) True G139937
TU176115 lncRNA upstream 1566 9237868 ~ 9242987 (-) True G140016
TU176214 lncRNA upstream 304042 9540344 ~ 9540553 (-) True G140093
TU176247 lncRNA upstream 360641 9596943 ~ 9607316 (-) True AMCG00003017
TU176248 lncRNA upstream 364906 9601208 ~ 9607316 (-) False AMCG00003017
TU176301 lncRNA upstream 504352 9740654 ~ 9740940 (-) True G140174
AMCG00002993 mRNA downstream 268873 8910435 ~ 8967149 (-) True AMCG00002993
AMCG00002988 mRNA downstream 655649 8571588 ~ 8580373 (-) True AMCG00002988
AMCG00002987 mRNA downstream 665115 8570218 ~ 8570907 (-) True AMCG00002987
AMCG00002985 mRNA downstream 693062 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002986 mRNA downstream 727670 8505689 ~ 8508352 (-) True AMCG00002986
AMCG00003001 mRNA upstream 37911 9274213 ~ 9281237 (-) True AMCG00003001
AMCG00002999 mRNA upstream 48247 9284549 ~ 9298719 (-) True AMCG00002999
AMCG00003000 mRNA upstream 89157 9325459 ~ 9346898 (-) True AMCG00003000
AMCG00003006 mRNA upstream 135071 9371373 ~ 9384002 (-) True AMCG00003006
AMCG00003003 mRNA upstream 197758 9434060 ~ 9440740 (-) True AMCG00003003
TU176103 other downstream 388182 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 741426 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1297781 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 1883201 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 2169701 7062473 ~ 7066321 (-) True AMCG00002935
TU176114 other upstream 356 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 1065498 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 2404514 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 2457704 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 3614719 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile