RNA id: TU176137


Basic Information

Item Value
RNA id TU176137
length 3924
RNA type TUCP
GC content 0.44
exon number 2
gene id G140030
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9325488 ~ 9330464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGACATTCCACGACCCTTGGGACACCCAAAGATCTCAGATTACACAGCTACATTATATTATTCCTCGCCCCTCAGCAAGATGTATCAGTTTTCTCTTTAACTGCAGCTCACATCTTCATTAACTCTTCCTTGACAATTCATCTTAAGCAATACAGGTATTTTCAGGACAAGACAAGCTCCCAGACATTTTACAAAAGACAGCAGTCCATAAATGGCtcatcataatttattttatgctaaaatgtacagcattttttaaGTGACTGACTAAAAAGATAACTCATAAATACAAGACTGTCATTCTGTCCTATTTTGTACACATATCCAGGTTTCCCTCTCATTCCTACCAGTCACTCTGTACAGGTACAAAGGCtacaaaaaagcaatataaacagacacaaatacaATTTGCTTTTTACATGCGATTTGTTAGCTTAGTTTGGTCTATTCACAGGCTACTGCTCTAcgcttttgtaaaatataaatccaacattttataaagatagaaaaaaatctacagatggaatgaaaatgtaagtttAAAGGCATTTTCATAAAATAGCAACTTTGGACTAAATGTacgtttgttttctctttattcTGCCACATTTCTGGACATGTTCGGTGAAATGCTTTAGAATCGTATGGGTACAAACACTGAGATATGCTTCATTATTTAGACAGAAATCAGTTTGCATTATAAAACGGAAAGCTGCCTCATTTAAGGAAATTTGTTACAAAAAGTACTGAATTATACACATTTAGCaataaaacctttcaaactGAACAACTGAAACGAGACTAAGTTTTACAATTTTTACAGTATTagaattaacaaaaatatagtttaatctTCCTCCCAGTACAGGGAAACCTAAATCAAGGCCATAAATTCTTAAAATGGCTTGCTATTAAGCACAACACTTGTACAGTACTACTTAATGCACTGTCACTAACAAAGACGTCGTAGCATGCTAAGTGTCaccttacaaaaaataaaacgaaaatgtacaataatttaaatatataaaggcATAAGTATGGAACAAAATCTAAATTTCAGTACTGCTGGACAGGTACACGTAAAAGGCTCTAATGtccaaaatattatatttgtagcAGGCACATTAAATGGCTCCATTATACAGGCTGCTACAAAACTGCAGTCTCCCCCCACTGAAGCCCCCGTTCAGTACAGCTCAGTATATCACAGGCTGCTGCGCTCATCAAAGGAGAATAACACGAACCAAACAAAAGTCATCTTCATTTTGATGATGTAAGGcttcccattaaaaaaacatttttttccaacaaaaagacttttttttttgcattcatacCAAGTGCtggttatttttagtttttttttaaagaaaagaaaaacaaaagaaaaaagtttccACAAAACGGTGCTCCAGGCATAGTTGTGCATTTTGGATACTATGCACTTCGATTGATAGTTACCAGGATCCAACTAACGCCTCATGAAGGGTCCGTTTAGAGGCTGTTTAGACATGCCCGTGTTCATGTACCCATGATGGCCTGCTGGCGTGTACATCATGTTGCTGTGTGGCGGGCCTTGCATGGGTTGCTGGGGGTATGGCTGCGTTCCCATCATTCCCATCTGCATAGAGTACTGTGGGGACTGATTCATGTATGCCGCGTGGTTTCCATGATAGCTGCTGTTCATCATCGGCTGAGTCATCCTGTAGCCGTTCATTGCATTAAGGgggttcatgttcatgttcatcgAGTTGACGTTGTACGCTGGTGCGGGCATGAGATTCACGCCCATGTTCATCCGTGGCATGGCTAGCGTCCGAGCAGGGGCCTGCATTGCCACCGACTGTGAAGCCCGTCCGTACATCTGCTGCTGATGATGGGGCAGCGGCGCCGATTTAGAGCGCATCGAAACGTGGCCCTTGACTGGCATCTGCGTCTGCAGCCTCTGGGAAGGCGGGATTCCTATGTTTGGTGCAGCCATGTTACGTTGCAATAGAGAGGGAGGCAGATTCATGGGCGGAGGGGTCAGGTTGGGTGGAGGGGTCATGGTGGCCTGTGTCTGGGGTCCCCCCGGGACAGAATGcggagactgagagagagaaacgagACCTGTGTTGCTCAGCGgtgaagacagagagacactgtTTGCATAGGATGTGACAGAAGCTGAATGGTTATAAGGCAATGGATGATCCATCAGAGTGTTGGTTAATTGCTGTAGTTTTGCCAAGCTAAAGGTTGCTGATGGCTGTGAATAATGTCCACCACCATAATCACTTTGGCTCATCCTCTCGTAAATGCCAATATTTGGGTTGCCAGTCTCTGGGATATCGGACAACTGCATTGGTGATGCGAAGTTGGTAGGCATGCCACACTGTGACAGCTGTTGCTGGGTATTGCTTGGGGGTCTTTCCACAACACACCCTTGGGGCGATTTGACACTGCAGTTCTGTGGAGAGTTAATACTGTTCTGTTGAATCATGCTACAGCTCCCGTTAATGTTGGCCATCTGCTGGGTCACTGCACAGCTGCTCTGAGAAAGGCTACTGGAGGAAATGTTACTGTATGAGCAACTATTCTGGGAAGAGTTATTTCCACAAATGCTGCCACCTAACGTTGAATCATAGCTACTAGGGTTTTCGTAATTTTCTGTTGTGCTCTCAATACTGCCAAGATCACtaaatccactgtcaacaacctgCTGAGAATGGTCTGAAACTGAAGGGACATCCATCATTGGGCTGGTTTCCATATTTTGCAAAGATGGCACTGAAATAGCACTCTGATCAGGGCTGATTTGTGTATAGCTGTTCTCTAGAACAGAAACGGCCGGGCTATTTACAGaacgcactgactgactgggaTGAGAGTGCACCGACGATATAGGGCTGCTGTGGTCGGACTGCTGACAATCATCCATGGTGGCCATCTGAGGGCTTTGGTCAGCGTGAGCATAGCTTTGCAAGCTTCTACACGCTTCCTGTGTTTCCACACAGTCCTGGAAATTGCTTTCTTGCTCATTTTCCTGGGTGAGGGACTGTACTGCTTGTACCGTTTCGGTGTCAATTTCCGTGCAAATGGTATGATCCTCTTTTATTACAGGGCTCAAGGATTCACTCTCCTTTTGGTCAAGGTCATTATTGTTCTCGTCGTCCGACTCGGACTCCGGCGGATGATCAGAGTCCACAATGTTCTCGTTAACTTCATCACTCATATCAGGAGCCAGATCTTCACTACAGTTCACAGTTTGATCGTTATTTTGCACTTCATTGTTCGCAACATGAAGGTCTAAAAAAGCTTCTGGATACTCGGGCTGCTCTTTCAAGGCCTCTGCAGTACTCTCCTCTTTTTCCAGCTCGGTTGAATCTACATGACTGTCATCCTCATCATCTGCGTCGTGATCCTCGTTATGCACTGGATCTTCTTCGTCGTCGTCGTCTTCCTCATGCTCCTCCGCATGTGAAGCGGGCTCCTGCTCCTCTACTATATTCTCCCCTTCTTCATGGTCATCCTCTGCGTGATCAAGTGCTTCCTGGGCCTCGTCGTGGCTGTACACGTCTTCTGGAGAACCTAGTTTCTCGAAAAACTCCTGCTTTTTCGGAAGCAACTCTTCGGGACTCTGCGACTCGGAGAGAAGTTTCTCAAGCTCTGTATCCAATGGTTCAATCTCTCGGCCCGGCTCGCTGTCCTCCTCTGTGATTGCAGGAGCCTTTCCGTGGTCCTCCTTCAGTTCTTCTGCCAAAATCTGGTGGTCTGCCTCCATAGGAGTTTCAGGTGGGGTGTACAGATTCAACTTGAAGCCCATCTTTCGTTCCTTCTTCAGTCTCCACTTGGGTGGGCCACGTTTCACCCCTTTTGGCCAGCCTTTCTTACGCTTAACAGGTTGAGGATTGTCTTCTTTTTTCACAGGTCCATTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176111 lncRNA upstream 81646 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 178916 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 365063 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 392519 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 404758 8920468 ~ 8920730 (+) True G139997
TU176280 lncRNA downstream 400184 9730648 ~ 9730863 (+) True G140156
TU176316 lncRNA downstream 436622 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 451470 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 457283 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 514420 9844884 ~ 9853426 (+) False AMCG00003019
AMCG00002997 mRNA upstream 347 9316731 ~ 9325141 (+) True AMCG00002997
AMCG00002998 mRNA upstream 8855 9300311 ~ 9316633 (+) False AMCG00002998
AMCG00002995 mRNA upstream 52330 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00002996 mRNA upstream 81389 9236740 ~ 9244099 (+) True AMCG00002996
AMCG00002994 mRNA upstream 169353 9153964 ~ 9156135 (+) True AMCG00002994
AMCG00003002 mRNA downstream 163587 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00003008 mRNA downstream 231816 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003009 mRNA downstream 249135 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003007 mRNA downstream 299348 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003018 mRNA downstream 411974 9742438 ~ 9742839 (+) True AMCG00003018
TU176130 other upstream 20648 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1281268 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1398656 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 1946001 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 2251952 7066943 ~ 7073536 (+) True AMCG00002939
TU176317 other downstream 447786 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1424437 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1879109 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 2155727 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 3043502 12373966 ~ 12374360 (+) False AMCG00003129

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12381049_12417489.mRNA True 7825 mRNA 0.47 20 CI01000012 12380192 ~ 12418697 (+)