RNA id: TU176280


Basic Information

Item Value
RNA id TU176280
length 216
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G140156
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9730648 ~ 9730863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttaattttattatttctttgaaGTGATCTATTTATCAGAGAGGTTAAATTCTTGGTTATCCATCAATCGGGGCGTTTTTCAAAACGGTGTCATTCAGATGTGACATATTCCCTTTGCAATCATACGCATCAGTTATTCTGCTCAATAGGAGCACAAAAGAAAATGGTTTAACTTTTCTTTACTTTGATTCAGGGATACTAGCAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176111 lncRNA upstream 486806 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 584076 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 770223 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 797679 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 809918 8920468 ~ 8920730 (+) True G139997
TU176316 lncRNA downstream 36223 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 51071 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 56884 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 114021 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA downstream 114021 9844884 ~ 9853426 (+) False AMCG00003019
AMCG00003007 mRNA upstream 97290 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003009 mRNA upstream 146763 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003008 mRNA upstream 155013 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003002 mRNA upstream 222351 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00002997 mRNA upstream 405507 9316731 ~ 9325141 (+) True AMCG00002997
AMCG00003018 mRNA downstream 11575 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003019 mRNA downstream 113913 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003020 mRNA downstream 170404 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003023 mRNA downstream 192818 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003024 mRNA downstream 198576 9929439 ~ 9937381 (+) True AMCG00003024
TU176137 other upstream 400184 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 425808 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1686428 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1803816 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 2351161 7376687 ~ 7379487 (+) True G139720
TU176317 other downstream 47387 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1024038 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1478710 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1755328 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2643103 12373966 ~ 12374360 (+) False AMCG00003129

Expression Profile