RNA id: TU176301


Basic Information

Item Value
RNA id TU176301
length 287
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G140174
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9740654 ~ 9740940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGTCcatatttgtgcatttgtgGCGACCATTTATTATCTCTCAGGCTGAAATGACTTACCACTGGTTTCTTTGTGGTGAAGGGAGTTCAATAGTGCTCCTCCAGTCGCCCTTTTAGCTGTTAATCGAGGTGTCTGTCATCAGCAAGCTTCACATGCTCAGCTCTGTTTTGCCAGCGTCTAAAAATGATCAAATCGAGCAACATGTCAATTGTGCGCATACCTGAGCATCTCCGGGATCCCAGTGGATGTGTACACTCCTCCCCTAGTAATCCGGGGACAGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176247 lncRNA downstream 133338 9596943 ~ 9607316 (-) True AMCG00003017
TU176248 lncRNA downstream 133338 9601208 ~ 9607316 (-) False AMCG00003017
TU176214 lncRNA downstream 200101 9540344 ~ 9540553 (-) True G140093
TU176115 lncRNA downstream 497667 9237868 ~ 9242987 (-) True G140016
TU176112 lncRNA downstream 504352 9236022 ~ 9236302 (-) True G140014
TU176327 lncRNA upstream 24713 9765653 ~ 9771507 (-) True G140199
TU176347 lncRNA upstream 107955 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA upstream 107955 9848895 ~ 9853413 (-) False G140217
TU176363 lncRNA upstream 148218 9889158 ~ 9889626 (-) True G140228
TU176422 lncRNA upstream 295238 10036178 ~ 10037857 (-) True G140279
AMCG00003013 mRNA downstream 1404 9736172 ~ 9739250 (-) True AMCG00003013
AMCG00003014 mRNA downstream 12014 9701635 ~ 9728640 (-) True AMCG00003014
AMCG00003016 mRNA downstream 102438 9637791 ~ 9638216 (-) True AMCG00003016
AMCG00003010 mRNA downstream 110968 9621880 ~ 9629686 (-) True AMCG00003010
AMCG00003012 mRNA downstream 119614 9607782 ~ 9621040 (-) True AMCG00003012
AMCG00003015 mRNA upstream 5389 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003011 mRNA upstream 10245 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003021 mRNA upstream 21956 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003022 mRNA upstream 50907 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003029 mRNA upstream 194471 9935411 ~ 9941910 (-) True AMCG00003029
TU176114 other downstream 502924 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 892814 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1246058 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1802413 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2387833 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 560860 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1899876 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1953066 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 3110081 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 3110081 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile