RNA id: TU176316


Basic Information

Item Value
RNA id TU176316
length 402
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G140188
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9767086 ~ 9773065 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTTTAGTTAACTTAGTGTTTTTTCAATGTGATTAGGAAAAACAAGTGTTAAATAAGTGTGAGGGTaaaagaatatattaaatatgataatgctgctgaaatacattaagatatataataaaaaaggtaGGTGTGATTTATATTTGGCTTTTGTCAACCAAAGCACATTTTACTCACCTGTTGAACCCCATCTGATCTAATCTCCAAGGTCCAGTGCAAGAGAAATGAATTCGCTCATTATCATCATGCATCTGAAGTCGGATTGGTCTCCTGAGACCCCAGGAGATGTTAAGTAAACCTTCGATGATTAATTCGCCTTCCTCCTGCTCTCGACTGTGCAGCTGGAAATGTTTCCCTTCATGGTaacaattatatgttttcaACAGGGACAACAGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176280 lncRNA upstream 36223 9730648 ~ 9730863 (+) True G140156
TU176111 lncRNA upstream 523244 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 620514 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 806661 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 834117 8932750 ~ 8932969 (+) True G139998
TU176318 lncRNA downstream 8869 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 14682 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 71819 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA downstream 71819 9844884 ~ 9853426 (+) False AMCG00003019
TU176356 lncRNA downstream 165791 9938856 ~ 9960116 (+) True G140223
AMCG00003018 mRNA upstream 24247 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003007 mRNA upstream 133728 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003009 mRNA upstream 183201 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003008 mRNA upstream 191451 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003002 mRNA upstream 258789 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00003019 mRNA downstream 71711 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003020 mRNA downstream 128202 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003023 mRNA downstream 150616 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003024 mRNA downstream 156374 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003026 mRNA downstream 192891 9965956 ~ 9976662 (+) True AMCG00003026
TU176137 other upstream 436622 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 462246 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1722866 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1840254 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 2387599 7376687 ~ 7379487 (+) True G139720
TU176317 other downstream 5185 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 981836 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1436508 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1713126 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2600901 12373966 ~ 12374360 (+) False AMCG00003129

Expression Profile