RNA id: TU176317


Basic Information

Item Value
RNA id TU176317
length 1045
RNA type TUCP
GC content 0.38
exon number 4
gene id G140189
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9778250 ~ 9780452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTCACTTCACATGTTTAACCATGAAGTTCATACTTAAAATGTGCAGCCTCATTCTGGCAGTTGCAGTAATTCAACTCCTTCAAGCTCCTCTGGGAGAAGCACAATTCGTTCCAACAAGATGCATGTGTGtaaaaagtgaaacaatattTCGTCGACGCTTCACCAATTTTACTGTAATAGAAAAAGGATCGCACtgtaaaaatactgaaatcatACTGACTCTGGACAAGTCTGGTCACCAAGTATGTCTAAGTCCTGATGGACAACGAGGCCAGAGGCTACTCAAATGCTGGAACAGgataaataaagatgaaagcaagaagaaaaaatgcattcGAAGAAGGCAAAAAAAAGTCACAGAGAAAGGGAACAAGGAATCCAATAGCAGAAACATTGTGAATCCTCAGCTGTCGCATGACTAATAACAGAGACATTTGAGGGGGGTAACAATAAGGAAGAATGAATGTAGAAGGCAAGGAGAGCTGGAGTACTGAAAAATTACTTGCCATGCTGTGATATGTTGGTTAAAAAGTCTGTCCCTTTctatgtacatgtgtgtgttcagaaaGATGCactttaaaaggttaaaagcaAACTATTCAGGGATGTATTCCATCACTATTATGTTACTGAAAACCATGATATAAAGGTCTGGTGGGATATATGAGAGCCAGATCAATCTAACATTTCATGGCAGCATAGGACAGTTTAGTTTCTTTTGAATGTTGTTCACAAATCACATTGCATTCACTCCATTTGGGCAATGTTATTAATAAAGGCCCCATTGTAGAGGGTACActtaatctttaaaaatgtcctcTGCACTGCAGCTGAGCTTCCTACCGGTGCTGGTGCTGGCCAGGAGTTCACATGGTGCACAATTGGTGGGTGAAACGTAGCCCCAGCAGGGTTGGGgtttgggatttgtttttattttttatatttaataattattttatactacatttaaaaaaaaatcaacatcaatgtgcttgttttttatGGTCTGTTAAATAAAATTTTGTACTTTCTCAGTTAATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176316 lncRNA upstream 5185 9767086 ~ 9773065 (+) True G140188
TU176280 lncRNA upstream 47387 9730648 ~ 9730863 (+) True G140156
TU176111 lncRNA upstream 534408 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 631678 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 817825 8958739 ~ 8960425 (+) True G139999
TU176318 lncRNA downstream 1482 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 7295 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 64432 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA downstream 64432 9844884 ~ 9853426 (+) False AMCG00003019
TU176356 lncRNA downstream 158404 9938856 ~ 9960116 (+) True G140223
AMCG00003018 mRNA upstream 35411 9742438 ~ 9742839 (+) True AMCG00003018
AMCG00003007 mRNA upstream 144892 9629812 ~ 9633358 (+) True AMCG00003007
AMCG00003009 mRNA upstream 194365 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003008 mRNA upstream 202615 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003002 mRNA upstream 269953 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00003019 mRNA downstream 64324 9844776 ~ 9853453 (+) True AMCG00003019
AMCG00003020 mRNA downstream 120815 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003023 mRNA downstream 143229 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003024 mRNA downstream 148987 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003026 mRNA downstream 185504 9965956 ~ 9976662 (+) True AMCG00003026
TU176137 other upstream 447786 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 473410 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1734030 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1851418 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 2398763 7376687 ~ 7379487 (+) True G139720
TU176681 other downstream 974449 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1429121 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1705739 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2593514 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2950279 12730731 ~ 12739767 (+) True G140939

Expression Profile