RNA id: TU176347


Basic Information

Item Value
RNA id TU176347
length 3396
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G140217
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9848895 ~ 9853413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attcttttaacattttattgaaaaattaCAAAGTGAATTGAAACAAAAGTATTAATGCTTGTCTGTATACGAACAGTGATGgttaaaaagctaaacaaaacatcaaagatGTAGTATACGTATAGAGTAAGCTGCCATAAAAGAGTTACAGTTTTCTTCACATTGTGTGGGAGAAATATAAGCACATAAGCATTCATCAATATTGAACAAATGATATACAGTAAAACAATCATCTTTGCATTGAAAACTCACTGTGGCAACAATAACTGTTAtcaatatttgttaaaaaaaaaggtgccAGGTAATAAAATCCCCTTCAGAATATGATATTTGCCTCTCAGTCTAAGTTTTCATTACAATGCCTATGGTCATATTGCTGGCCTGTTTATGTTTTGGTCAAGTGATCCTGATGTATGATGACAACATATTTACTTAATCTCATGGTCAACGTCCTGCATGGCTTATGTACACTTTTCTTGCCAAAAAAGTGGAACATTTTGATATGATTTTAATAGCGCGATCCAGATGtagcacacacatatatttggCTTTTTAACTAGTGCATAAACAATTCACCATGCAGAGACTGTTTCTTGTCATTAGGGAAGCGAATGAAAAATGCTCTGAGCCTAATAGATCTCTGTTTATCATTATTCTAAAGAATCACAGAATTTATAAACTTTTGCAAAAATGCCGTTTTGTTAGTTTCATTGATTTCAGTTTCTCGTTATGTGGTGTGAAGCTGAGCAGAGCACCATTCTCATACAGTGATCAAATCCCATCTAAATACCTCTCTAAAAtccctgtgtttctctctgatCTATGTGCCTGCAGGCTGCGCTTCTGATAAACAGTTGTCTGATTCACTGAATCGGACTGGAACACCACAGTTTACATAAGCAAGGCAAAAAGAAAACGAAAGCATTATagcaaagtaaaaatgtaagaaaaagtatttactgaaaaaacataattacaagattatttttttcagggtTCTATCAACCCACGTGGCCTTCTGGCCTTAGTCTGGCATTGAACTtctcctgaaatgtttgtgttcagATTGTTATAATAAGAATTTGGAATGCTAAACTACTTTTGGCACACATCTGATACACAGATGCTTGACAGTTTGAAAAGATTCCTAATGTCTGACAAATATGACAGAATACAGTTATAGTTCATCCATTCATCATGCAGAAGCTGTTTATACAGCACCACCCATCACCTCAATTTGTGGTATCTGGGGAAAAGTCAGTTAGCTTTTTGTTAATTACTGTTAAATAGTGCTACATATTTAGATATTACATGATTGTAATAACAGAGCACTGTCATTTCTGTGGCTGAACTTGGGTCCCACAACACATCAGAAACTAGTATTTTATATGGAAATATCAATATTATCATTTCTGAAGACCAAAAGTTAAATGTCTtaagattattaaaatgatacGTAATTTAGAGCCATGATTCACGTGACAGTTGTTTATCAGATTATGcctaatgtaattattaaaacatttatggaATGTAATCTcgtctgagttttttttttttttaatggtttacagtttacatttcaCAAGACATACTTTCACAAAGATAGTTCatgaataatgtgtttttggacagcacattattatttttcttaaagatTCCTATGAAacagacaataaaaatgtaacacacaTCTATAAGGAAACACTGTAGTCTAGTACATTCTGGGAAAACCTTCATATTGTACTGCCATatgaacaacaaaatatttatgaaaaacacaagacaattacaaaaataaatttaattaatctctACTGCtccatataaaatgtaatgagtagaaaacaaaatgtgcttttaaaatgttttggcaactgcttaaaaaatatgtaattaatttggaaatacaCTGTGGCATAAAATGTCAATTACTAATGTCTGCTACTACGGTATAAAATGTAGGGAGAAAATGGTTTGGGTATTTTTATATCATCCTCAAACTGTTTTCTGTTGAATTATCATATTTACCCCAGTGATCTTAATTTTAAGTTAATATCTATTTGTATAAAGTGCATTATATTGgagaaaacaattacaacagctactaccactactactactcctACTGCTACTAATTCTACTGTTCAGCTGCTTCAATgctgacatttaaatataaaataattctatCACTTTACTTGTTGgggtaaaaatgtgtgtataattctaatggaaatggaaaatgaatatGTTGTTCATATTTTGGTTTCAGCTTAAATCAAGATTTATCCCCTCtgctttggtttttatttttgagtaaTGTATTCTGAAAAGGAAGAAACATCTGTTAATGTATACAACGAAACTATCTTGCCTGTATTCTCATACAAAACACTCTTTTTAATGCCCCGTAGCATATTATGCTGTCTCAGTACTGGCCCTTCTTAATTTGATGTGGCACAATAGGCTCCCACTACATCAAAGCATACCTAATTGTTAATTGAAAGACCTAAATAATGTCACCTGTCAGATAGAAATCtataactgtataataattCCACTGATATTGTCCCTTTTGGCAGTTTCTTGCCCctttatgaacattttattacattcattaaaaatactaaaGCAATTCAGAGGGGCAAGGGTTCACAAGTTTAAGGGTAATGCTAATACTCTTTTGCGTGGATAATTAAAACATGGACTATGCTGTCTGTAGATTTTGATATAGTCATTCATTGCTGCAGTACTAAAGGTACGTGATGAAAACATTAACAGTGTTTCCCTTTCAAAATAAAGGTGGTGGATTAGAATCCATTCAGATGATGGGTGATCATTTTACGCTTTCTTGAGCAAAGAGTTAAAGGCCTGAAAACCCCCTCTTGATACTGCATGGTAGAATTCCAAGAGCAAAACTCCAAACACCTCTGTTAACTACATCTTATTAAAAAGTCTgtataaaattatacatatacaaatatatttataattgcacTTATAAGAGTAGTGTCAATACGAGTGGCAGTGATCCACGGACAGATTTAATGCTGACAAAGGATGTTTGGCAATTAAGTGCTGTTACAGCAAGCAGTCCAGAAAAGAGTACATATGTTACATGTCTGCATGGTCGGCTGGCAAAGTCGCTGTAATCCTGTACAGGTCCTCAATTGCCTTGTCTtctactttttttaattGTTAAGAGCATTCTTTAAATATTGCTGCAGCCATAGAGTTTGAGGGTTAATACACacttctttgttgtttttcagtgtggCACTGTCATAAAAAGAAATGgttgagaaaacagaaaatttaattaaaattcagtcagtgtgtccacCAATCATTTACATTCCATTATGCTTTTGGGCTGATCGCACAATCGAGGACCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176327 lncRNA downstream 77388 9765653 ~ 9771507 (-) True G140199
TU176301 lncRNA downstream 107955 9740654 ~ 9740940 (-) True G140174
TU176247 lncRNA downstream 241579 9596943 ~ 9607316 (-) True AMCG00003017
TU176248 lncRNA downstream 241579 9601208 ~ 9607316 (-) False AMCG00003017
TU176214 lncRNA downstream 308342 9540344 ~ 9540553 (-) True G140093
TU176363 lncRNA upstream 35745 9889158 ~ 9889626 (-) True G140228
TU176422 lncRNA upstream 182765 10036178 ~ 10037857 (-) True G140279
TU176545 lncRNA upstream 368367 10221780 ~ 10339260 (-) True G140368
TU176655 lncRNA upstream 769193 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 799912 10653325 ~ 10656997 (-) True G140458
AMCG00003022 mRNA downstream 56626 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003021 mRNA downstream 75548 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003011 mRNA downstream 90693 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003015 mRNA downstream 98382 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003013 mRNA downstream 109645 9736172 ~ 9739250 (-) True AMCG00003013
AMCG00003029 mRNA upstream 81998 9935411 ~ 9941910 (-) True AMCG00003029
AMCG00003028 mRNA upstream 88643 9942056 ~ 9945940 (-) True AMCG00003028
AMCG00003027 mRNA upstream 127797 9981210 ~ 10032434 (-) True AMCG00003027
AMCG00003041 mRNA upstream 226442 10079855 ~ 10091736 (-) True AMCG00003041
AMCG00003037 mRNA upstream 274919 10128332 ~ 10134010 (-) True AMCG00003037
TU176114 other downstream 611165 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1001055 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1354299 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1910654 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2496074 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 448387 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1787403 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1840593 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2997608 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2997608 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile