RNA id: TU176363


Basic Information

Item Value
RNA id TU176363
length 307
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G140228
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9889158 ~ 9889626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaaaacagccctgacccgtcgaggcatggactccactagacctctgaagctgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggactccatggatcggacttgtttgtccagcacatcccacagatgctcagtTGGAGATCAGGGGAATTTGGAGGccaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgaactacaggagctcgtctgttggatcagaccacacgggccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176347 lncRNA downstream 35745 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA downstream 35745 9848895 ~ 9853413 (-) False G140217
TU176327 lncRNA downstream 117651 9765653 ~ 9771507 (-) True G140199
TU176301 lncRNA downstream 148218 9740654 ~ 9740940 (-) True G140174
TU176247 lncRNA downstream 281842 9596943 ~ 9607316 (-) True AMCG00003017
TU176422 lncRNA upstream 146552 10036178 ~ 10037857 (-) True G140279
TU176545 lncRNA upstream 332154 10221780 ~ 10339260 (-) True G140368
TU176655 lncRNA upstream 732980 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 763699 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 929143 10818769 ~ 10819159 (-) True G140521
AMCG00003022 mRNA downstream 96889 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003021 mRNA downstream 115811 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003011 mRNA downstream 130956 9751185 ~ 9758202 (-) True AMCG00003011
AMCG00003015 mRNA downstream 138645 9746329 ~ 9750513 (-) True AMCG00003015
AMCG00003013 mRNA downstream 149908 9736172 ~ 9739250 (-) True AMCG00003013
AMCG00003029 mRNA upstream 45785 9935411 ~ 9941910 (-) True AMCG00003029
AMCG00003028 mRNA upstream 52430 9942056 ~ 9945940 (-) True AMCG00003028
AMCG00003027 mRNA upstream 91584 9981210 ~ 10032434 (-) True AMCG00003027
AMCG00003041 mRNA upstream 190229 10079855 ~ 10091736 (-) True AMCG00003041
AMCG00003037 mRNA upstream 238706 10128332 ~ 10134010 (-) True AMCG00003037
TU176114 other downstream 651428 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1041318 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1394562 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 1950917 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2536337 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 412174 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1751190 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1804380 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2961395 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2961395 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037474 True 5593 mRNA 0.42 22 NC_007132.7 20356458 ~ 20376607 (+)