RNA id: TU176403


Basic Information

Item Value
RNA id TU176403
length 221
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G140263
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10017978 ~ 10018198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCTGTgaagttacaaaacaaaaccaacataaCACCTATCAATCATGGATTACCTTGCCTGTCCCCATTAACTTTCCATTCAGATATGCAGAgactttacatgtttttttcaggtCCTTGGAAATGAGCACTGCCAAGTGATGCCACTGTCCTGGAATGAGGTGTTTGGAGCACTGGAAGCGAACGGAGCTGGGCAGAGCGCTGGTGACTTCGGGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176400 lncRNA upstream 14459 10002832 ~ 10003519 (+) True G140260
TU176389 lncRNA upstream 38533 9979232 ~ 9979445 (+) True G140250
TU176356 lncRNA upstream 57862 9938856 ~ 9960116 (+) True G140223
TU176343 lncRNA upstream 164552 9844884 ~ 9853426 (+) False AMCG00003019
TU176344 lncRNA upstream 164552 9844884 ~ 9853426 (+) False AMCG00003019
TU176404 lncRNA downstream 407 10018605 ~ 10018823 (+) True G140264
TU176405 lncRNA downstream 1217 10019415 ~ 10019619 (+) True G140265
TU176406 lncRNA downstream 2626 10020824 ~ 10021457 (+) True G140266
TU176408 lncRNA downstream 6741 10024939 ~ 10025149 (+) True G140268
TU176409 lncRNA downstream 12028 10030226 ~ 10030523 (+) True G140269
AMCG00003025 mRNA upstream 20720 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003026 mRNA upstream 41316 9965956 ~ 9976662 (+) True AMCG00003026
AMCG00003024 mRNA upstream 80597 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003023 mRNA upstream 91954 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003020 mRNA upstream 97434 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003032 mRNA downstream 15726 10033924 ~ 10038457 (+) True AMCG00003032
AMCG00003033 mRNA downstream 28539 10046737 ~ 10048774 (+) True AMCG00003033
AMCG00003031 mRNA downstream 49923 10068121 ~ 10077255 (+) True AMCG00003031
AMCG00003034 mRNA downstream 80261 10098459 ~ 10128943 (+) True AMCG00003034
AMCG00003035 mRNA downstream 145885 10164083 ~ 10166896 (+) True AMCG00003035
TU176317 other upstream 237526 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 687514 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 713138 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1973758 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2091146 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 736703 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1191375 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1467993 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2355768 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2712533 12730731 ~ 12739767 (+) True G140939

Expression Profile