RNA id: TU176405


Basic Information

Item Value
RNA id TU176405
length 205
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G140265
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10019415 ~ 10019619 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATATCCAGGGCCACTCATATCAAATTCGACGAAGGACGGGGATGTGGACACTTTGTTGGGGTGAAAGTTCCGCGGCGAGGTCATCGAGATGAGGCTGACAATGCGGTGCTCTGGGATGACTGATCCCCAAGACACATTCAGCAAACTAAAACTTGGCTTCAGCTTTTGGTTAACATTTCGGTCAGTGTGATCTATCTTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176404 lncRNA upstream 592 10018605 ~ 10018823 (+) True G140264
TU176403 lncRNA upstream 1217 10017978 ~ 10018198 (+) True G140263
TU176400 lncRNA upstream 15896 10002832 ~ 10003519 (+) True G140260
TU176389 lncRNA upstream 39970 9979232 ~ 9979445 (+) True G140250
TU176356 lncRNA upstream 59299 9938856 ~ 9960116 (+) True G140223
TU176406 lncRNA downstream 1205 10020824 ~ 10021457 (+) True G140266
TU176408 lncRNA downstream 5320 10024939 ~ 10025149 (+) True G140268
TU176409 lncRNA downstream 10607 10030226 ~ 10030523 (+) True G140269
TU176494 lncRNA downstream 215216 10234835 ~ 10237083 (+) True G140331
TU176503 lncRNA downstream 228216 10247835 ~ 10251525 (+) True G140340
AMCG00003025 mRNA upstream 22157 9996566 ~ 9997258 (+) True AMCG00003025
AMCG00003026 mRNA upstream 42753 9965956 ~ 9976662 (+) True AMCG00003026
AMCG00003024 mRNA upstream 82034 9929439 ~ 9937381 (+) True AMCG00003024
AMCG00003023 mRNA upstream 93391 9923681 ~ 9926024 (+) True AMCG00003023
AMCG00003020 mRNA upstream 98871 9901267 ~ 9920544 (+) True AMCG00003020
AMCG00003032 mRNA downstream 14305 10033924 ~ 10038457 (+) True AMCG00003032
AMCG00003033 mRNA downstream 27118 10046737 ~ 10048774 (+) True AMCG00003033
AMCG00003031 mRNA downstream 48502 10068121 ~ 10077255 (+) True AMCG00003031
AMCG00003034 mRNA downstream 78840 10098459 ~ 10128943 (+) True AMCG00003034
AMCG00003035 mRNA downstream 144464 10164083 ~ 10166896 (+) True AMCG00003035
TU176317 other upstream 238963 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 688951 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 714575 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 1975195 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2092583 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 735282 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1189954 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1466572 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2354347 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2711112 12730731 ~ 12739767 (+) True G140939