RNA id: TU176422


Basic Information

Item Value
RNA id TU176422
length 1066
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G140279
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10036178 ~ 10037857 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACAATGAATGCAGAACTTGTACGGGTTCTGGTTTGCTTCGACAAGCTCGGCAATTGTTGTAAACTTTGAGTCAGTGTCAGCTCTTCGTAACCGCCCTGGATCTTTTGTCAGAACCAGACGGAACATCCAGAGCATCGCTGTGAAGTGGGTGACGGACATCAGGAGCAATGCATTGACAGGAGAATTGGCATGATCTTGTGGAAGAAGCACAGCAATGAATGAAATATGCCAGCTGCAAATGTACCAAGATAGATAGGATTTGGCAGCCTGCAAAAAgcacaaaagaacaacaaattGTAAAATCTCCTGCAGACGAACAGTGCACGGTCACAGAGAATATTCAGATTGTTTTACACGGAAGCACATTCCCGTATCCGTGGCATAAATGCGTCACACTGCCTGCTCTGCATAGACTCTGCACACCCTCAATAGGCTACTTTCTTGAGCctcaaaacacagacagagcagagatCTCTTCCAGGAAATGTAATTAGCTGCAGAAGTGTGTTGAATGACTGTGCTCTCTGGTCAAAGCAAGCAACCAACCTCAGCAATTGATTTGAAGCCAACATGCTGATCTCAGGCATTACCTCACCCGGCTCACATCACATCATCTCGGCATACCTAGATAAGACACTTCAAAAGCAGAGTACAATGCTGATGTTCTCTCTCATGGGTGTGGTGCCACCTGTACTTGAATTGGATTCTAATGGGCACATTCACAGAGCAGGATATTTAATTAGGGTTTTAATGCGACATACCTCTGGTAGCTGTTCATTCTGTGATATTGTGAGAAAATGCTCTTTGCCAGTGAAGGGAATACCAGCCCACAAAATATCCCCCCGTATTTTCCCAGTACTGCCGCAATCAGGAGGACAATCGATCCACTGATGGCAGGGAACAGAAGGGCCCAGTAGTACATGCCTTTGAAAGAAAGCACAAACACATGATAAAGTATGGGTTTATAATGTGAAGAAGAcacaaatattgttaattaacaGGGACCATCTTGTATGAGAAAATGATAACCAATCCCTGATCGAATTCAGTCATGATATGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176363 lncRNA downstream 146552 9889158 ~ 9889626 (-) True G140228
TU176347 lncRNA downstream 182765 9848895 ~ 9853413 (-) True G140217
TU176348 lncRNA downstream 182765 9848895 ~ 9853413 (-) False G140217
TU176327 lncRNA downstream 264671 9765653 ~ 9771507 (-) True G140199
TU176301 lncRNA downstream 295238 9740654 ~ 9740940 (-) True G140174
TU176545 lncRNA upstream 183923 10221780 ~ 10339260 (-) True G140368
TU176655 lncRNA upstream 584749 10622606 ~ 10623742 (-) True G140456
TU176659 lncRNA upstream 615468 10653325 ~ 10656997 (-) True G140458
TU176739 lncRNA upstream 780912 10818769 ~ 10819159 (-) True G140521
TU176757 lncRNA upstream 888261 10926118 ~ 10929972 (-) True G140537
AMCG00003027 mRNA downstream 3744 9981210 ~ 10032434 (-) True AMCG00003027
AMCG00003028 mRNA downstream 90238 9942056 ~ 9945940 (-) True AMCG00003028
AMCG00003029 mRNA downstream 94268 9935411 ~ 9941910 (-) True AMCG00003029
AMCG00003022 mRNA downstream 243909 9791847 ~ 9792269 (-) True AMCG00003022
AMCG00003021 mRNA downstream 262831 9762896 ~ 9773347 (-) True AMCG00003021
AMCG00003041 mRNA upstream 41998 10079855 ~ 10091736 (-) True AMCG00003041
AMCG00003037 mRNA upstream 90475 10128332 ~ 10134010 (-) True AMCG00003037
AMCG00003039 mRNA upstream 147749 10185606 ~ 10190625 (-) True AMCG00003039
AMCG00003040 mRNA upstream 196675 10234532 ~ 10246632 (-) True AMCG00003040
AMCG00003038 mRNA upstream 210000 10247857 ~ 10262159 (-) True AMCG00003038
TU176114 other downstream 798448 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 1188338 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 1541582 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 2097937 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 2683357 7348811 ~ 7352821 (-) True AMCG00002945
TU176570 other upstream 263943 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 1602959 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 1656149 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 2813164 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 2813164 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile