RNA id: TU176503


Basic Information

Item Value
RNA id TU176503
length 3567
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G140340
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10247835 ~ 10251525 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACtcaattttccattttaattgggtttaaaaaacaaggatgaaaattaaaattggtttataaatgtacacatcacctgtaaaataaattgtacagaTATTAAATTAGCAGAAATCCTatcttataatatatattttaaaattactaaaTATACAGATTTCTATATATGTACACTCTTGGAAGTTTTTGAAAACACTTGATTTTTGCATGTTGTTTGCGGTCTATGAGccagtgtttcattttgtttccccctCAAATACAAgtcctgtgaaaataaatggctTCTTGGTTAACAGGTTCAGGAAGAAGTGGTCAGAATCCAGGCTCCTTCGGTGGTCACCGCAAAAATATTCATGGATTGACGTCCCCAGCTTTTGACTTCGAGAGTCTCCGGGACCACTCCGCATGGCTttacaacacagaaaacactgaCAGTTTATGTTGACAcactcaaaaaataataatgtaagttcattttaacaaaaataactcCCCCCTCAACCCAAGACAAAAAGACACACACGCTAAATAGCAttcttacaaattaaaaaaaaaaatgcttggaGAAGCATACAAGGAAATCACAGGTCTGCCAGAGGAACAAATTGAACTTCACAGATTTCTCAAATATTCTGCTTTGTCAGCACAGACTCCTACATACCGATTGCAAAGGAGACTATTGCTTATCGTGTGAAAGCATAGTAAAATGGACGGACGTTATATTATTGCCATCTAAAGCCTAACGGATTGATGGATGAGAACATAAAACGAATGGGATGATGTTGTACCATTTGTATAGGAAAATACTATTACTGGCAGTACCATGCAGTTCCCTCCCTATACGTGGTAAGTTACCATAGTTTAAATATtgtgctcttttgtacactaCACATCCTAATCTAAACAAGGTTTTCCATTAGTGCactaattaatgaaaaataaaatatggggGTTATTTCACTAAGTTAATTCTAGCCATTCCTGTCTATAATAGTATGGTTAACTAGGACAGTACTGATCTCTAATACCTTAAATGTTAGTCTCTAATGTACATCACTGTATGATgtctacaaagtattgagcaataaataaaaccttgcTTGAAGGTTATGATGATATAGAAGCAATACATACCCCAGACATCTTCCATGTAAAGCTACATTTAAAGTTCAACaagaacattaaatattccAAAGAAACCCATGCAGAAAAACATCACACTAATCAAGAATATCCTTACATAAAAATGACTGCACTTCTCCTGGAGTACCAGTGTCTTTGGGataggaataaaatataaatacaacactACCGTTTGCCCCCTGTGGACTAAAATGAGACTAAGTTACTATAACCTCAAAGGGCCAAGGTAAGCAAGATCTTTCTACCCCCAAGGGTAATTTGTAGTTTGGTTTCTTTaatgaaagaacattttatttaaagagttTACTTTAAGACTTAAATAGCTTGACATACGTTCTGTTCTTTAGTTTGGAATGCACaattcactcattcattcattcattgcaGGTTCAACAGACCACAAGTGATTATCAGCAGCATCTACCTCACTGATCCCCTTCTTGACCAATGATTCTGATCAGTGGACGCAGCTCAGCTACTGAACCAGGCGGAGCGATTTCAGCTGGGAAGAGGCCTACCTGGCTTCACCAAATGCCAACTCACAAGGGATCATGATGGTGGGGTGAGAAGACTACTTGTGCTTTCCTTGGTTCCCCTTTCAGATCAGTAGCTAAGTGCACCCAGGAATCGAACCAGCGAATTCCTGGATAGGCTCATTTCATACAAGACAGAACGTGGCATTTCAAGATTCTGCTCATGCGTGCTTTCCGTTTTTTCACACGGGCAGACTGTCCTTCCACAAAGAGTTTATCGAAGCCTTTTGATGCAAAGACCTTGATGAAAGATGAGGATGATTGCCCATTACCTAGTCTGCATGATAGCTTGTCTATACAACATCCTGCTTAGAAATGAGAATCTCTTAAGAGGCTGACATCTTTCCTCTGCAATCTCCAGTGTCTACAATGATCTGCAGGCTCAGAGTGCATGAAGTATGGAAAACCACTAGTGTAAAACTCAAggcataaaaataagaaaatgaggGATGCGGTTTCTTTTCAGCATTTGACATGATACAATTGTGTCTAGAAATGGTTAAAATATAGCCGTGAATTAAAAGGCAACTATGtcatatgtttttacatttattaaaattccTGAAACTTAACTGTAAAGTAGTGAGAAGGCTTTTCAGTAACACCAGCATTCcagaagtttattttcttaaaggcACACATCTACATTTCAGTGTGCAAAAAAGCTACACATTTAGGTTTCTtgtcataaaaaacaaataataatcacatttgGACAAGGAACAAGATATCATATTGCTGGGAAAGAATGGGAGACCTCcagaaactgaaatgtttccaGCTTTCTCTGCACATTCGGTCTTGCTTCTACTTTTGACCAATGTCAAATCCTCTTTGCGATCTGCTTCCACAGTTGTGTAAAGGGGCGCCAGATGTCTTGCTGCAAGGTGGTCATCCTTTCCCCCCCATCTTGCTCCTTATCATGCACAGcttttatatagatttatttccATCTCTCCAGCTTCCAGTACAACAATGGCCTggatttggttttgttctgcATTTCCACCATGCTTAAAACACAACAGACCTTCTGGACTGCAACGCACTCTGGCATATCTTTGTCCCCCTCTTTGGGACTGCCACCCAAGTTACCTCAGCAGAACAGTAAATTATTACacttataattgttttaatatatagtataagGACATACATAAGCAGTATATGGAGTCTCTccctttttaaattttattccCCTACCCCACTCCACACCCCCAgtttttgtatggttttgctCACAGGCTGCCCGAGAGCTGACTCGGTTGGGGATGCTGGTTCACAATGACCTGGATCACGAAATCCTTCTGGATCTTGGTTTCCTGCAGACGGGTCTTATCTGTGAGCAACTTCCCTGAGAAGAACCAGCGTTGGTGTGCCGGGTCAATGTCCTCCTGGACCTGGAGCTGCTTCTTCAGTTGGCCAATGGTATCTGCCATGCTGGCACTGAGCCGCAGGTCCTTGCCCGTGGAAAGACGCACTTTAAGCTGAAATTCCTTCTTGGGGACAGCCTGGGGCTCAGGATTTTCCACAGTCTCCTCCTCACTGCGCTCTGAGATCAGGTTGACTGGCGGGGCCAGGCAGTACACTGGTAACTGGTACCGATTACCCAGTTCATCATAGCACTCTGTCAGAGAACCTAAAGAATACACCACAGGAAACATGGGGCAGTGTGATGCTTGCTCCGTCCACAATTGCCTGTGCCAGCTCATGGTCATTGCATTCGATGGCAACGGCTGCTGCCTTTAATGCGTCCCAGATCTCCTTGCGTCCCTCAAATGCAGGGGCCGTGTCCCAGAATTCATCCCTCTTACTGCGCAGCTGTCCCTCTGTCATGGGGTAGTCACTCTTCCACTTGGGCTTGTCTTTCTTCAGGGGCTCATTTCGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176494 lncRNA upstream 10752 10234835 ~ 10237083 (+) True G140331
TU176409 lncRNA upstream 217312 10030226 ~ 10030523 (+) True G140269
TU176408 lncRNA upstream 222686 10024939 ~ 10025149 (+) True G140268
TU176406 lncRNA upstream 226378 10020824 ~ 10021457 (+) True G140266
TU176405 lncRNA upstream 228216 10019415 ~ 10019619 (+) True G140265
TU176516 lncRNA downstream 36912 10288437 ~ 10289935 (+) True G140351
TU176623 lncRNA downstream 373238 10624763 ~ 10627882 (+) True G140434
TU176624 lncRNA downstream 380738 10632263 ~ 10632489 (+) True G140435
TU176625 lncRNA downstream 401808 10653333 ~ 10656991 (+) True G140436
TU176631 lncRNA downstream 429246 10680771 ~ 10683612 (+) True AMCG00003066
AMCG00003043 mRNA upstream 21804 10195537 ~ 10226031 (+) True AMCG00003043
AMCG00003030 mRNA upstream 66193 10176642 ~ 10181642 (+) True AMCG00003030
AMCG00003036 mRNA upstream 76474 10169506 ~ 10171361 (+) True AMCG00003036
AMCG00003035 mRNA upstream 80939 10164083 ~ 10166896 (+) True AMCG00003035
AMCG00003034 mRNA upstream 118892 10098459 ~ 10128943 (+) True AMCG00003034
AMCG00003044 mRNA downstream 9815 10261340 ~ 10286055 (+) True AMCG00003044
AMCG00003045 mRNA downstream 34630 10286155 ~ 10288094 (+) True AMCG00003045
AMCG00003051 mRNA downstream 57547 10309072 ~ 10317799 (+) True AMCG00003051
AMCG00003050 mRNA downstream 74189 10325714 ~ 10326214 (+) True AMCG00003050
AMCG00003053 mRNA downstream 210751 10462276 ~ 10484842 (+) True AMCG00003053
TU176317 other upstream 467383 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 917371 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 942995 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2203615 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2321003 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 503376 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 958048 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1234666 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2122441 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2479206 12730731 ~ 12739767 (+) True G140939

Expression Profile