RNA id: TU176516


Basic Information

Item Value
RNA id TU176516
length 1376
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G140351
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10288437 ~ 10289935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttttgataaaaaatatttaatttctggtTGATATCACAATTTTGTCAAAAGCGTCTTCAAAACAGTGCTGTAATTACCATCAGAAATGATATAGCCTATTTCACTTCAGATTCCAATTGCCGTTTTCTTAACAGACCATGAAGGCCATAACAGCActtttacaaaaaactaaataatggtCACTAATGCATCAGGTAGCTTAAATATGAAAGATTCCATCATTTGTACTTTTTCACATTCTCAAGTTTAGTTCAAGATGTTctacaaatatgaatatttctcATGCATAGCTCCCACTCCTTCAATGAAAATTGCAATTTAGAAGGATAATTACAATGGAATATATTCCTTAGTAAGCAGGTTTAAAGAGACGGAGACCATGTTTCagtgcaagaaaatatatacataactaGCTTGGGTCCACAGCACATACCTTTCACTGGGACactttaattgtacattttactaTACACTGAATGGAATCAGGTAATATTGTAGCAGAGTCTTGGAAACTAGAACTTATCCAAACcacttaaacattaaaatgcaagttgtgtgttttatatcagACATTCTCTCAGAGCACTGACATAATCCATAAAAATGCAGCAAATATGTTTGAAAAGATCCAGTGGAGCCAAACACACATCACCTAAAACTAATCGTCCGAATGTGAGGAAATCAAAGACAATCATGAAATCTTAAATATTCTTAGGCTACTGATATACGATTAGTGATCATATTGAAAGTTTCTTGGAAAAGTGACAATGAAACCCTAAAATGGGTCTCTCTGCCTGTACTGGCAATGCATTCCTTTGTCCCTTTCACATGGAAAGCTGTATTTGGTGTCCATCACTGTCTGATCCTGGAAATGAAGGAATGCTGGTTGCTGAGGGGCCCCACTGTGAGGCAAGGTGCTGCTGAAAGAACCACAAAACACTTCACGCCTGTAGGTACTCTGGCTGAACCCTCGCCACCTTCCGGTATTCCTTCGTGTGAGTTCGAGGGCACTGCATTTCACACCAGCTGATGGGCACCATCTGCACACCGCCTCGCTGTGTGCCACCACCACACCCAGCTCATTCTCCGCTGTGGTCAGCAGGTAGTTGGACTGGACATCACCGAGAGAGATCTACCCACAGGTCAAGGACAATCCTGGCAAGAAGGGACTGAACCAAGCTGGCTGTTGGGGTGGCTGAGACAAAAAGCTCAGCGGTTTCAAAAGAAGAGCGAGACTTATGCAGCGCTTTCAAGCTTATTTCCTAAGCTGTTGCCCTTCACCAATAAGCAATTAATAGACTTAAACGAACAAGACATGCATAATGGGATAAGGTTTTTACATTGCAATAGCACACAACCCACCCCAGCCTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176503 lncRNA upstream 36912 10247835 ~ 10251525 (+) True G140340
TU176494 lncRNA upstream 51354 10234835 ~ 10237083 (+) True G140331
TU176409 lncRNA upstream 257914 10030226 ~ 10030523 (+) True G140269
TU176408 lncRNA upstream 263288 10024939 ~ 10025149 (+) True G140268
TU176406 lncRNA upstream 266980 10020824 ~ 10021457 (+) True G140266
TU176623 lncRNA downstream 334828 10624763 ~ 10627882 (+) True G140434
TU176624 lncRNA downstream 342328 10632263 ~ 10632489 (+) True G140435
TU176625 lncRNA downstream 363398 10653333 ~ 10656991 (+) True G140436
TU176631 lncRNA downstream 390836 10680771 ~ 10683612 (+) True AMCG00003066
TU176865 lncRNA downstream 917571 11207506 ~ 11209502 (+) True G140612
AMCG00003045 mRNA upstream 343 10286155 ~ 10288094 (+) True AMCG00003045
AMCG00003044 mRNA upstream 2382 10261340 ~ 10286055 (+) True AMCG00003044
AMCG00003043 mRNA upstream 62406 10195537 ~ 10226031 (+) True AMCG00003043
AMCG00003030 mRNA upstream 106795 10176642 ~ 10181642 (+) True AMCG00003030
AMCG00003036 mRNA upstream 117076 10169506 ~ 10171361 (+) True AMCG00003036
AMCG00003051 mRNA downstream 19137 10309072 ~ 10317799 (+) True AMCG00003051
AMCG00003050 mRNA downstream 35779 10325714 ~ 10326214 (+) True AMCG00003050
AMCG00003053 mRNA downstream 172341 10462276 ~ 10484842 (+) True AMCG00003053
AMCG00003058 mRNA downstream 253534 10543469 ~ 10565618 (+) True AMCG00003058
AMCG00003057 mRNA downstream 322571 10612506 ~ 10622148 (+) True AMCG00003057
TU176317 other upstream 507985 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 957973 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 983597 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2244217 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2361605 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 464966 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 919638 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 1196256 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 2084031 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2440796 12730731 ~ 12739767 (+) True G140939

Expression Profile