RNA id: TU176623


Basic Information

Item Value
RNA id TU176623
length 3120
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G140434
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10624763 ~ 10627882 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGACACTTCCGGTTACATGAATCAGTAGAAATAACTGGTGATGTTACAGAAGTAATAGTTTTGCAAGATtcagtataaatacaaatagttgTAGAATGTGAcgggtatttttgtttttgcttactTTGTAAAGAGGGTTGATATTTCACAGGCAgtcttcttttttaatattttcatttcaatgatGTGTACAATTTGCAGAGCTCCAGGAATCGATGGCTAACtttttttgtgctgctttgttttagtactacagattttattttgtttcagtaatactgaatttatttaattcagggAGGATACcatagatgaaaacaaaaatcacaaagtGTATTTAAgtagatttttaattttcactgtAATAGAAAGTGACACGGAAATGGACTTCTGTTAACACAATTTATTAAATAACAGCATGTTCTGATTTTGTATGGGGCTACAATACAAATGCAGGTTATGGATCTTTTGAGAATTTGCAGCATTATTGATTGGACAAGCTACTCGATTTCAATTTAATCAAGTTATAATatgcttatttttctttttctttatttcggGGAAAGTCTGGCAAGAATGTGATTACAGTCTTCAATGTAGCGGGAAGGCTACACAATCACAGCTTTCCCTGTCTGAACTATTTTTCACTTCACTGAAAGACATGAAAGATAGACCAAGCCATAGTAATTTCCATTCTCAGTCAATGGCCAATTTAATCCACAGCCCTTGGCTACACATTACATGTTCTttctatcattatttttaagtacagGTGTCATTATGgtattaaaaatgaactttTCCATTTAGTTGATGTGAGACAGCTAaacaaagttttcttttttaatgaccATTCACGCACAGTACATGTAAATATaactggaggggaaaaaagtaaaacggGAAGATTTATAAATTAccaagataatacattttttattttaggtgaAATATGTTCTTTTTGAAACAGAAAATCCCAGTTTGTGGTATCCCTACTGTCCACATCTAAACTCCAGATTGGTATACAATGCGATGTTTGTGGGACATTAGTTGTTGTGTTGATGTTTGCAGGCTCACATACAAAACCTGTGCCTGCTGAATAACCACCATGGCCAGATGTGCAGCCTGTTTAAACGTGATAAAAGGGATTTTATTTGGTTTCCATGTTGCTGTGAAATTGGGCTTTTTACAGCATGTCTGTGCAATTTTAATagacatgtatttaatattttagcaTGATTGTTTAAACAGGGATTTCATTTCACTGcccaacaaaaacacataagcATGAGGTCTGATTGCACTGCCTCATTTGTCTGACAGGCCCTTGGTGCATTTCCGCAACAACTTTTAAATCTACTGAAAAGTGCTGATGTTTAGCTTCTTTTTCAGATCTATAAAAGAAAACCTAACTGCTCACTGTTGAGATGGTTGCCTGAGTGTTTCCAGTTGGGATACCTCAACCCATAGCAAAGAGAACAAGGGTAATTCGCAGCTGTAATGTACACATTGCTGTTGGTTAAGAAATAATACTGCTGGCACACTGACAGTTATGATTGACTGCATACCAAAACCTTTACTTACAGAGTTGGAATGAACATCTAGAGAGACTGTAACTTCTCCCTGATCTGACCTTGTTTAACAGATTTGACCTTTCAAGCTTGGTCCGCAGTGCCTAATAGGTCACAAACTGAACAATAAAAAACCTGCATGTAGCATATTGAATAcgaaaaaataatttatatatttctaaaagaaTAATATTCACTTGCCCAGTTTTGAAAAATCAAAGTTTATTTCTCTACCAATCTGAACTTAATTTTAGACATAACTCTTACAAACAGAACTGCCTGAATACTGAAATTTTATGAATAAAGTGCATCATTTACTGAAAGCATTTGACCTGTTCCAGCAAAAATTCCAACAGAGCGAGAGACAAGATTATCGGTTTGAACAGAAATAATCGGCAGTTCTAttggtaattgtttttgtaaatacttaaaactGTACATGAGGATACATGTGCAACATtgaaaaaaactttaaacataaaaatattatattgtttttatacaaaacaaactttgtttttcaaaaagggATGTGAATTTGGAGAAACAGTACTCTTACACATGAAGCACCAACATCCAGATCAGAGAATCAGGACACGAAATCCCGGCTGAACTCGACTCCGAGCACAAAGCAGCAACTTTCACCCCAAGCTACCCTCCCTGACGGCCGAGCAGGAGTGGGGTTGGCACTGCAGGGATCCGATCCGTTCCTTCCAGGTTTCCAATAGTGGGGATCGATGCcggtaatttttttattttacaagtttATCATTGTCTTCCTGATTACAGAGTAAGAAATTGATCTGGTATTAGCATATTTTATGGTAAGTCCATTCTTCAGTGTGAGATCTTTTATGTATATTACAAAAACTGAATTAGAAAATCTTAAGACCATAGAACCCAAGTGTGAATTAATTTGGAAGCAATACTAAGGTTTACAAAAACTGCTGTCAGTTTGACACCTGTCCACGTCGGTGTGAAGAATAGAATGGACATTAGAGAAGACCTTTCCAGAAGTGTTCTTTACTGCACTGTTAAAGGTGTTATTCCTGGCATTTCTGGAGTGGACAGATGCCATTCTGCGACCCGTTGATGTTGAATGCACTGAGGTAAGTGCTCTTATGACCCAGTCGTGACCCTGCCACTGAGGACTAGCAGAGCGTTACCGTGATGATGGGTTAGATGAAGTTGCTGGAGATCTGGCGCGTGTGCTCAAACAGGTCCTCAATCTCCGAGCTGTAGGCGTCTCCTAGGGGCAACAATAGGAAGAGCTTCATTCGCACGTTTCTCATGCtttcagggtgtgtgtgtttctacaCGAGCGCATGCTGCACTGAGGTTTACTTTGTGTGCGACACAAGCCCGGCTGGACGTAAGCACGGTGTAGCAGAGAGCGCAGGGCAGTACCTGTGTGACAGCCATACATCCAGATACGGTTTCCGTCGTATTTGCATCGGCAGCGCATCACGTTGTTGGTGAAATCAGATTCGGCCATATCCAGGCTAGGGTTCACTTCCACCTGCGGGAACAGCATATTGCTCATATGGG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176516 lncRNA upstream 334828 10288437 ~ 10289935 (+) True G140351
TU176503 lncRNA upstream 373238 10247835 ~ 10251525 (+) True G140340
TU176494 lncRNA upstream 387680 10234835 ~ 10237083 (+) True G140331
TU176409 lncRNA upstream 594240 10030226 ~ 10030523 (+) True G140269
TU176408 lncRNA upstream 599614 10024939 ~ 10025149 (+) True G140268
TU176624 lncRNA downstream 4381 10632263 ~ 10632489 (+) True G140435
TU176625 lncRNA downstream 25451 10653333 ~ 10656991 (+) True G140436
TU176631 lncRNA downstream 52889 10680771 ~ 10683612 (+) True AMCG00003066
TU176865 lncRNA downstream 579624 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 617374 11245256 ~ 11247278 (+) True G140632
AMCG00003057 mRNA upstream 2615 10612506 ~ 10622148 (+) True AMCG00003057
AMCG00003058 mRNA upstream 59145 10543469 ~ 10565618 (+) True AMCG00003058
AMCG00003053 mRNA upstream 139921 10462276 ~ 10484842 (+) True AMCG00003053
AMCG00003050 mRNA upstream 298549 10325714 ~ 10326214 (+) True AMCG00003050
AMCG00003051 mRNA upstream 306964 10309072 ~ 10317799 (+) True AMCG00003051
AMCG00003066 mRNA downstream 53133 10681015 ~ 10683612 (+) False AMCG00003066
AMCG00003065 mRNA downstream 58388 10686270 ~ 10693974 (+) True AMCG00003065
AMCG00003064 mRNA downstream 77751 10705633 ~ 10719938 (+) True AMCG00003064
AMCG00003070 mRNA downstream 153119 10781001 ~ 10787555 (+) True AMCG00003070
AMCG00003075 mRNA downstream 191022 10818904 ~ 10824933 (+) True AMCG00003075
TU176317 other upstream 844311 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1294299 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1319923 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2580543 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2697931 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 127019 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 581691 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 858309 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1746084 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2102849 12730731 ~ 12739767 (+) True G140939

Expression Profile