RNA id: TU176624


Basic Information

Item Value
RNA id TU176624
length 227
lncRNA type inter_gene
GC content 0.68
exon number 1
gene id G140435
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10632263 ~ 10632489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCACTGGTGCCAGATCCAGGACTCGCGGGTGGCGCGGGGTCTGAAGTCGGCCCGGCCCAGGTTGTGGATGCGCGAGGAGAAGCGCAACAGGCGGCGATGTCCGTAGGGCCAGTTCATGCGGTCAGCGGAGGAGGACAGGCAGTTCTCCTCGTGGGCGCAGGTGAGCAGGTGCAGCGGCCGGTCCTCCAGGTACGCCGTCTCCTGCACCAGCTGGGCGTTCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176623 lncRNA upstream 4381 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 342328 10288437 ~ 10289935 (+) True G140351
TU176503 lncRNA upstream 380738 10247835 ~ 10251525 (+) True G140340
TU176494 lncRNA upstream 395180 10234835 ~ 10237083 (+) True G140331
TU176409 lncRNA upstream 601740 10030226 ~ 10030523 (+) True G140269
TU176625 lncRNA downstream 20844 10653333 ~ 10656991 (+) True G140436
TU176631 lncRNA downstream 48282 10680771 ~ 10683612 (+) True AMCG00003066
TU176865 lncRNA downstream 575017 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 612767 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 848316 11480805 ~ 11481037 (+) True G140692
AMCG00003057 mRNA upstream 10115 10612506 ~ 10622148 (+) True AMCG00003057
AMCG00003058 mRNA upstream 66645 10543469 ~ 10565618 (+) True AMCG00003058
AMCG00003053 mRNA upstream 147421 10462276 ~ 10484842 (+) True AMCG00003053
AMCG00003050 mRNA upstream 306049 10325714 ~ 10326214 (+) True AMCG00003050
AMCG00003051 mRNA upstream 314464 10309072 ~ 10317799 (+) True AMCG00003051
AMCG00003066 mRNA downstream 48526 10681015 ~ 10683612 (+) False AMCG00003066
AMCG00003065 mRNA downstream 53781 10686270 ~ 10693974 (+) True AMCG00003065
AMCG00003064 mRNA downstream 73144 10705633 ~ 10719938 (+) True AMCG00003064
AMCG00003070 mRNA downstream 148512 10781001 ~ 10787555 (+) True AMCG00003070
AMCG00003075 mRNA downstream 186415 10818904 ~ 10824933 (+) True AMCG00003075
TU176317 other upstream 851811 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1301799 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1327423 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2588043 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2705431 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 122412 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 577084 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 853702 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1741477 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2098242 12730731 ~ 12739767 (+) True G140939