RNA id: TU176625


Basic Information

Item Value
RNA id TU176625
length 3659
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G140436
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10653333 ~ 10656991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagattaaaataaatttaatgcACTATTGACTGTACTCTTTGGCAGCagtgcaacacaatgcatacatAATTCAGAAACACCATGGGATCATCAAGGAGGATTACAGAGCTTTGATTAACACGTTTCGTTTCTAATTGGCAGTTGGTCCTTACATACACTTTAGAagatcataaataataaaacagaaacctcTGGGAACAAAAATCAAAGTATAAAAGGTCAACTTGTGTCCTGATAAAAAACATGGGTAGTGATGGCAAGTTCTCTATTAAAATGTGGGGGTGATAGGGACAACAAACATGCTCTGAATCATATGCATGGTAGGCACATTAAGAATGatatttaaaagtgtaacaGTTATTTggaaagcattaaaaacaaaaacaaatggaatcCCCCCCACCTGACAACTCCTAAAGCAGTCCAGAATAAGGTCCTGACGCAACAACAGGAAGTCAGGTGATCACCCTGCTGGTCTCTTCGCATTGGTCCCTAAACCTCCATCTTTACAGAGCAGTGAGGTCAGATGAGATTTGAACACAGAACTTCGTAACATCCAGTTCAGAAACGACAAGAACCACTATTTAACCTTCCCGAATGACTGTGAACAAACTGCTCTCTGACACTCTGTCTCAGGAGAGGACTGCTGGGCTGGGGGGGGCTCGTCTGCCCTGCTCTCTTCAACTTTTATACATCCCGTAACTTCACACTGAGGCGATTCTCTTCTGTGTAAATGAACACCAAGTAGTACAATTCAGTGATCCTTGTTTTACATATAAAGCACACTTCATAATCTATCTATCTGCACTCAGCAATAACGTTTGAGATCTAGAACACACAGCAGTTGGGAGGAACTTCCTTCTCTATTATGAAGGCCCTTGCTTGTGATCAGCAGTGAGTGCTATGCTAGTATCATCCACTTTAGTGTCACCAGCCAATTAACCCAGAcctaaataacacattttccagAATTTTGTGCAGAACGGCTtcatgcagtttttatttaattgggggAGGAGACCCTAAGTATGGGCCATTAACTCCTAAAATGAGCCCAGTGTGAAGACAAGTAACTACTCAAAAACACATCGTTAGAAGAGTGCAGGACAGTGTGCCCCGGCCAGCATTTCTCTAGACTACCTGacgaactaaataaatattcaataaataactaaacactTTATGATATAGGTTTTTGACTCCAGCGTGGAGCAGTGAACATGTGCAAAAGATTTTAAACACTGTGTGCGACCCCCTTACCCTTTAAAGTGTCATTCCTTCCCTTTGGGACTCATTAACAGAAAAAGTGGATTATTTTGTGCACAGTATTCAGCAGAGAGATGATACTATAATATCAATACAGCCATAACACTAATCAGTAATCATTATTAAGAAGCTTGAGCTAGGCTTGAAGCATTTGGTTAGGGCTGCTGGAGTATAAAACAATTAGAGTTGTTGTAGTCCTGTACGGTTCTCCTCTTTTGGTTATTTAGTCCACTGATGGGCTTCAACATTAAgcatcagtaaaataaattaataaaacaatgcacaatgttGGTTCATACTTGAGAGCATAGCATTCAGTAAAATCAGAACGTTTCACCGTAAACCCAGCGCAACGTAAATCACTCACTCATTCAATAATACCCTTCAACCAGCTGGgcagtaaattaaattagcagGTCCTGTTCGACACGGTGCTTCTACCTGCCACTCTGTAATGGAGACTAATGTCCCTGGTGATCTGTGCTGTGCCAAGAGGACGAGGAAAGACTGTCAGAGGACACCTACTACTGCGGTCTTCCCACAGCGAGAccaaaagttaaaatattaaaagcagaaaGATAATTCTGTTTTCTATGCATTGGGACATGTTTTTTACTTGAACCGTGCTACTAAAACATATGCAGCTATCGTTAAATGCTGTTATGAGAAAATAATAGGCTGTACGGTTCATATGAACAGaagttgttttaattgaaactgCAGAAGCACAAAAATGGattcctatttaaaaaaataaaaacagtggcttttagaccaaatcaaaacattaccCCACTGGtgaatcgcaaattacaaagttgtaccccatcgcattttgatttataaatagtataaagcggctaacaataaattaaaccgcgATTGGGTACAGATTTCTACTTTGCAATTCATGGGTAGGGCCAAGTTTTGATTTGTAGCTACTACTTTAAGGCCACATTTCCCACATACTTTGGTTGCCCTCAATTTATTATCCGCATAAACCTCTTTGCTTGAGGGAATTACACAGAAGTTAACGTGGAGATCTTGTGGTACAAAGCAAGAACTACAGCAACAACGGCTATTAAGATTGGCCACAACAGGAGAAACCTCTCCCCTCAACAGGAACGTCATTCCAGAAGTCATTTTCCATAACAGAGACTACAACTGCCTAGTGCCTGATCAAAAGTGCCCATATGCATCATAAAACAAGAGAAAGCTACTGCATTGGACCCTGTTCACTATCAAAGTAAGACAGTACATCATTTGGTATGATCATGACATGACAATATACATAATactattttctttcacattttcctCCAACTAATTCACATCATACTTTACTATATAATCTAATTATTCAGAATGCTGTAGATTTAATGATCAAATCCAAACCAGGCACAAATATAGGAATCCCACGGACATGAAATTTGATGTCCGTTACCTATGGGGGTTTGGATTACGTGATTTTCCTCAGATCTACCTAGACAATCGATTTTCTAGACAGTCAGACTATGATTCACAGAAGGCACTTTATAAagacttaaataaatgcaatctcatattaaaaaagggaaatagcAGGACATGCACTAAAATCAAAGAATTCCCATCCAGGGTCGAGAACCCAGGCAAGAGACGTCTAATTCGGTGTAGCGTTAGACAGCTTTTATGAGGCCGTCACTGCCCAGCTCTGGACTGAGAAAAGGGGAtcaaaaattaacaaaacaaagggGTCAAAAAATTATTGCAACTAGTGGCCGCAGTACCAGAAGTCAAGCCCAGGTTCATTAAAATCACTACTAGAGGTAAAGGGAAAGAGCTGGAGTACAAACTGGTTCTTCGAAGTTaagttaaagtttaaaaaacacattgacacCTTCTGTAAACAAAGACACAGCCGTGGTACCGAAGACTGACAAGGATTTCAAATGAACATCCACCTACAGGAAGGATTTCACAGAAGCCTAGATTACCAGTCTCATCCTTTAGGCTgtgttataaattaataaaaggcaCTTATAGTGTGAGATTCAAGGTATAGCACAATCTAGCTCAACTGTATTATTGTtcgtgtggttttgttttggcacTGAGAAGGGAGGGACTGGAATAATACCAATCGAGCATCCCAGCCACAATCCCATCCCGACCAAGGCAAGTGGATACCATACATACAATCCGCCCAGCAGTCTGCAGTCTTGTTGCAGAAGACGGGAGCCAGAGCTGTCATTTGCAAGTGTCCCCTTCCTTCCAGAATACTGTGTGCCAGATATCGACAAGATTACAGGCTGAGACTTGTGCCCTATCTAGgagaaatattgaatatttccGCCATTAGATTAAGGACTCTTCTATTCTGCACTGAATTAAGGGGACACCTTAATCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176624 lncRNA upstream 20844 10632263 ~ 10632489 (+) True G140435
TU176623 lncRNA upstream 25451 10624763 ~ 10627882 (+) True G140434
TU176516 lncRNA upstream 363398 10288437 ~ 10289935 (+) True G140351
TU176503 lncRNA upstream 401808 10247835 ~ 10251525 (+) True G140340
TU176494 lncRNA upstream 416250 10234835 ~ 10237083 (+) True G140331
TU176631 lncRNA downstream 23780 10680771 ~ 10683612 (+) True AMCG00003066
TU176865 lncRNA downstream 550515 11207506 ~ 11209502 (+) True G140612
TU176900 lncRNA downstream 588265 11245256 ~ 11247278 (+) True G140632
TU176979 lncRNA downstream 823814 11480805 ~ 11481037 (+) True G140692
TU176981 lncRNA downstream 831239 11488230 ~ 11490662 (+) True G140694
AMCG00003057 mRNA upstream 31185 10612506 ~ 10622148 (+) True AMCG00003057
AMCG00003058 mRNA upstream 87715 10543469 ~ 10565618 (+) True AMCG00003058
AMCG00003053 mRNA upstream 168491 10462276 ~ 10484842 (+) True AMCG00003053
AMCG00003050 mRNA upstream 327119 10325714 ~ 10326214 (+) True AMCG00003050
AMCG00003051 mRNA upstream 335534 10309072 ~ 10317799 (+) True AMCG00003051
AMCG00003066 mRNA downstream 24024 10681015 ~ 10683612 (+) False AMCG00003066
AMCG00003065 mRNA downstream 29279 10686270 ~ 10693974 (+) True AMCG00003065
AMCG00003064 mRNA downstream 48642 10705633 ~ 10719938 (+) True AMCG00003064
AMCG00003070 mRNA downstream 124010 10781001 ~ 10787555 (+) True AMCG00003070
AMCG00003075 mRNA downstream 161913 10818904 ~ 10824933 (+) True AMCG00003075
TU176317 other upstream 872881 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 1322869 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 1348493 9301612 ~ 9304840 (+) True AMCG00002998
TU175890 other upstream 2609113 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 2726501 7923182 ~ 7926832 (+) True G139784
TU176681 other downstream 97910 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 552582 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 829200 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 1716975 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 2073740 12730731 ~ 12739767 (+) True G140939

Expression Profile