RNA id: TU176774


Basic Information

Item Value
RNA id TU176774
length 1702
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G140546
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10965532 ~ 10967602 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGCTCTTAAAATGTGATGCCACCTAGTGACCAAATTCTgtcatgatttaatttattatacactattctcaaacaaatgtaatgtcttCCATTATACATTGTGAAAATTGTCATTAACTCTAAATATTCTCAgtattttattaagaaataatacaCATCACAGTCGTAAACATCTCACCCAAGTTAtagtttttattgatatttaattatttttttaaatgaacactaTATTAATAGTAAGCATTCAGAAGAgcataaataaacagcagatAAAGGCAGGTAAGGACAACCATTGGCAGAAGCACATTCAAGGTATATTTACTGTGGAATACTATCAGAAACCCATGGAGTCACaaatcattttactttaaaatataggcctaatttaccatttgtaaacaaaacatacatttttaaaatcagcaaataaattaaacaaggcTAGACAAGAGCCCTCCAATTAAGTTATATTTCATTGTATAAATCCATTTGTGCCAGTGACAACCAAATCTGCTGCTAGTTTCCTTCAGCATTCAAAGGACTACAACAATATTTTAAGTTAGTGTTACAGGGGGGGGAAATGTACATGACAGAAGGTATAGAAGgctttttattcatgtattaatttttcattGTTCAGAAGTCGGTCAATCAGTTCGAGgaaaccattttcattttcaggcgCTCGATTTTGAGAGGGAGGAGGCCGGACATCTCTTCGCTAAGCTCCAGCTCCGTCTCCACCGCCTTCTTGGCCTCGGGGTTGCGCTCGCAATACTCCACCACAAAGCAGTAGCACTCCAGGGACTTGTTGAGGTTCTCCAGCTGCTTGCCGGAGTCGGGGGAGATGATCCTGCTGTATAGACGGGCGATGCGGAACTTGGCAACGAGCGCCGGACGCAAAACATCATCTTCCAGCTTGTCTGGGAACTTGCCATCCGGCGTCTTGACGGAGTCCAGGAACATCTTGTAGTACTTGATGGAGGACATGCAGAGGTGGTTGAACTTCTTGATGGTGTGCGCGTCCAGTTCGTCCTGCTTGTTGGCCACCACCAGCTTCAGATCCATCATCTCGTAATAGGTCTCGGCCAGCTCGAACTGAAGCTGCCGGCAGATGAGGAGGTAGTACTGCGCGTTGAGGTCTAGGCAGATGGGCTCCAGCATGTCGATGCGGCGCTTGTGCATCTTGCAGCGCCTCTCGCAGTCCTCCTCGAAGAACGACAGGGCCTTGAACAGGGCGCTGTGGTCTTGGAGCACCTCGATGTGATCCGTGACGTGGCCGTCCATCTCAAAGTATTCCTTGGCCTCGTTGACGTAGTTCTGCCCCACCAAGAAGATGGCTCGGGCTTCCTCAAAATCTAGAGGGTAGATGCAGCTCACCTTCTCTTCCAGCGCCAAAATCGAATCATATGTGTCGCTGGAACCAAATAGAATGGCACTCTTCAAgcctttctccttctcctcctcctgttcCCTCCGTCGTGCTTTCTGCTCCACCTGCCGTTCCACGTCCAGCTCACCGATGTTGTCCTGCATGAAGTCCTCTAGAAGTTTTTTGGCATCTTGCAGAAGATTCAGGCAATATTTGATCCAGCACCTGGCGATTTCTGCTCTCTTCTGACGGAGCTGCTCACGCTTCTCGCTTTCCGTCTCACCTTCAtcagaaacaacacacacctTTATTGAGCAAGTGCACAacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176757 lncRNA downstream 35560 10926118 ~ 10929972 (-) True G140537
TU176739 lncRNA downstream 146373 10818769 ~ 10819159 (-) True G140521
TU176659 lncRNA downstream 308535 10653325 ~ 10656997 (-) True G140458
TU176655 lncRNA downstream 341790 10622606 ~ 10623742 (-) True G140456
TU176545 lncRNA downstream 626272 10221780 ~ 10339260 (-) True G140368
TU176798 lncRNA upstream 43536 11011138 ~ 11037311 (-) True G140567
TU176821 lncRNA upstream 139794 11107396 ~ 11107604 (-) True G140588
TU176917 lncRNA upstream 266066 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA upstream 337869 11305471 ~ 11308389 (-) True G140648
TU176996 lncRNA upstream 364827 11332429 ~ 11333684 (-) True G140704
AMCG00003079 mRNA downstream 9131 10954588 ~ 10956401 (-) True AMCG00003079
AMCG00003081 mRNA downstream 14095 10945019 ~ 10951437 (-) True AMCG00003081
AMCG00003078 mRNA downstream 41954 10919149 ~ 10923578 (-) True AMCG00003078
AMCG00003080 mRNA downstream 52951 10907992 ~ 10912581 (-) True AMCG00003080
AMCG00003071 mRNA downstream 157799 10794054 ~ 10807733 (-) True AMCG00003071
AMCG00003089 mRNA upstream 72735 11040337 ~ 11047762 (-) True AMCG00003089
AMCG00003106 mRNA upstream 170595 11138197 ~ 11166902 (-) True AMCG00003106
AMCG00003097 mRNA upstream 202938 11170540 ~ 11175031 (-) True AMCG00003097
AMCG00003104 mRNA upstream 239871 11207473 ~ 11224433 (-) True AMCG00003104
AMCG00003099 mRNA upstream 257633 11225235 ~ 11230377 (-) True AMCG00003099
TU176570 other downstream 634160 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1727802 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2117692 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2470936 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3027291 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 673214 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 726404 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1883419 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1883419 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1883419 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile