RNA id: TU176917


Basic Information

Item Value
RNA id TU176917
length 1835
lncRNA type read_through
GC content 0.32
exon number 2
gene id G140648
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11233668 ~ 11308389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACAGACAAGAAACAGTCACTGTTATTCTACTTTCCACTTTTGTAGAGAATCAATTTATTCACactttttcatttgctttaacATAGAAGGCCACAGTGAAAatggataaaagaaaaaaagacttgtgTATAGTGTGCTCATTGATATTGTACAATTACACAAGATACACACCACACTTTGATTGAACTGACTTGTTCTATGTACAAGCAAAGACATTCCCATAGAGACTGGTTGATGGAACAAGTTCATTTTGGTGCATCTGCAACTTAACATCAGAGACCTTTAAGGTAAGCAACAGTGCATCATTAGAAATTAGAATTCAGCATATAATGTTACAAGACAGAGTTTCCAGGTGCAGATATAATCAGTCACACACCACAAATATGTGTTGCAAGTATAAAGCATAGAATGATACATGTTTATCAGCAATTTGTAATTTGACAAGTTTGGAAATTAAAACTGTGTACATAGTTTTATAGGTTTTAGTGACAGCAGCACAATTCTAAACCGATGACTGATGAAATACAGAAGATCAAGAACATTCTCCAAAACCATCACGTATCCACTATCTACTTTGCATACAGCAGACATATTTAACACCAGAATGAATATGTACagttttacaatttacataattacattgaaCATTACCCACTGAGTTTCGTTACATATTGAAGAAACCATATCTTTCCAAGAATTTCCTTTTAATGTACTGATTTTGCTTCATACGTCTGTCTCACCACATTgtacaaactgaaatattgtaACTTTCTACagtttaattacattgttttaaatgtatttcccatAAAACTGATTCAgataatgtaaattgaaattcTGGCACACACCCACCCAAATTTTAATAAAGGTCTACAAAAATTATGTACCAGAACTACACacgtacaaaaaaaaaaaaaaaaaaaaaaaaaaatgcgtgTATACACATCAAAGGACTGTGGGCCCACAAGCTTCTGAGATGAACAAGAGTCTTTGCTTTCAACTGTTGTTTTGGATTTACAATGATCAAATGGACAATTGTGCTCACTCTTGAATATCCCAATGTATAAACTAGAAcatctttttattcatttacatttcacagttaTACTGAActtttacacaaacaaatagaaGACTGCAAAAGATGTGGAATGAAAAGACCACACCAGAGTGATTAAAAGCTATTAAGAGTGATCTCTCAATAGTGTAAATTTAGTAACGTACCtctttttgtttcatatttgttaCAGAAACTGATTGTTGCGGATTACATTGGTTGAACCAAAACATTACAAGGGTATTCCCTGTACTGTTAGTACATACCATAATTAGCATGAAGTGGTACTGCAGCTATGTCCTTAGtggaaaatacattagaaaccaAATGGGTGTGAATTgattaatcataaaaataaaaaaaatccattctAGAGAACATAatgatatttttcataaatatgtacatgtgACTAATAGATTATAATCATGAATATATACCGAAGATAGAAGACCTTCATTGCAGTACAAGATTACACTGTACATCTGCAAGTTAATCTGATCATAAACGCTTTGGAGATGCAAAAAAGGCAAATATCGCCCCCATGTGGGCATTACACCTAAAACCTTTTACAGCCACAGTCTATCCATACTGGGAGTGCATAGCCAATttgcaaatacacatacatatacagctctggaaaaaattgagacaacataacattgatttctgaacttggagtggtctcactttttttccagagctgtatgtatattatataNNNatatatatatatatatatatatatatatatatatatatatatacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176821 lncRNA downstream 126064 11107396 ~ 11107604 (-) True G140588
TU176798 lncRNA downstream 196357 11011138 ~ 11037311 (-) True G140567
TU176774 lncRNA downstream 266066 10965532 ~ 10967602 (-) True G140546
TU176757 lncRNA downstream 303696 10926118 ~ 10929972 (-) True G140537
TU176739 lncRNA downstream 414509 10818769 ~ 10819159 (-) True G140521
TU176996 lncRNA upstream 24040 11332429 ~ 11333684 (-) True G140704
TU177049 lncRNA upstream 289669 11598058 ~ 11599956 (-) True G140742
TU177065 lncRNA upstream 310400 11618789 ~ 11619926 (-) False AMCG00003110
TU177066 lncRNA upstream 317036 11625425 ~ 11626381 (-) True G140756
TU177075 lncRNA upstream 478025 11786414 ~ 11789926 (-) True G140764
AMCG00003099 mRNA downstream 3291 11225235 ~ 11230377 (-) True AMCG00003099
AMCG00003104 mRNA downstream 9235 11207473 ~ 11224433 (-) True AMCG00003104
AMCG00003097 mRNA downstream 58637 11170540 ~ 11175031 (-) True AMCG00003097
AMCG00003106 mRNA downstream 66766 11138197 ~ 11166902 (-) True AMCG00003106
AMCG00003089 mRNA downstream 185906 11040337 ~ 11047762 (-) True AMCG00003089
AMCG00003102 mRNA upstream 52038 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003101 mRNA upstream 130976 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003103 mRNA upstream 147851 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003105 mRNA upstream 243302 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003110 mRNA upstream 300074 11608463 ~ 11622649 (-) True AMCG00003110
TU176570 other downstream 902296 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 1995938 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2385828 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 2739072 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3295427 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 332427 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 385617 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1542632 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1542632 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1542632 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile