RNA id: TU176979


Basic Information

Item Value
RNA id TU176979
length 233
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G140692
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11480805 ~ 11481037 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggagcatcttaatgaaaaccatattcttggagatagtcaacatgggtttagacgaggcagatcatgtcttactaatttattagaattttttgaacatgcaactgcagctgtagatcatgtgaaagcagaTGATATGATAtccttagattttcaaaaagcttttgataaggtcccacaccaaagactgatcctcaaattggaagctgtaggcattcagggcaATGTAAGTAGag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176900 lncRNA upstream 233527 11245256 ~ 11247278 (+) True G140632
TU176865 lncRNA upstream 271303 11207506 ~ 11209502 (+) True G140612
TU176631 lncRNA upstream 797193 10680771 ~ 10683612 (+) True AMCG00003066
TU176625 lncRNA upstream 823814 10653333 ~ 10656991 (+) True G140436
TU176624 lncRNA upstream 848316 10632263 ~ 10632489 (+) True G140435
TU176981 lncRNA downstream 7193 11488230 ~ 11490662 (+) True G140694
TU177027 lncRNA downstream 56610 11537647 ~ 11537954 (+) True G140723
TU177044 lncRNA downstream 150926 11631963 ~ 11633525 (+) True G140738
TU177186 lncRNA downstream 673776 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 805010 12286047 ~ 12286276 (+) True G140872
AMCG00003095 mRNA upstream 124075 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003093 mRNA upstream 149679 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003094 mRNA upstream 173323 11300317 ~ 11307482 (+) True AMCG00003094
AMCG00003096 mRNA upstream 241501 11233448 ~ 11239304 (+) True AMCG00003096
AMCG00003090 mRNA upstream 326704 11146588 ~ 11154101 (+) True AMCG00003090
AMCG00003108 mRNA downstream 21990 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003109 mRNA downstream 65364 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003107 mRNA downstream 90828 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003111 mRNA downstream 305385 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003112 mRNA downstream 321974 11803011 ~ 11806356 (+) True AMCG00003112
TU176867 other upstream 268694 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 723965 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1700353 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2150341 9325488 ~ 9330464 (+) True G140030
TU176130 other upstream 2175965 9301612 ~ 9304840 (+) True AMCG00002998
TU176980 other downstream 5154 11486191 ~ 11487884 (+) True G140693
TU177209 other downstream 892929 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1249694 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1397648 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1625419 13106456 ~ 13110634 (+) True AMCG00003158

Expression Profile