RNA id: TU177027


Basic Information

Item Value
RNA id TU177027
length 308
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G140723
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11537647 ~ 11537954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcagtacctatcaaaagtggtccaaggaaggaaaagcagtgaaccggcgacagggtcatgggcggccaaggctcactgatgcacgtggggagcgaaggctggcctgtgtggtccgatccaacagacgagttactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176981 lncRNA upstream 46985 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 56610 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 290369 11245256 ~ 11247278 (+) True G140632
TU176865 lncRNA upstream 328145 11207506 ~ 11209502 (+) True G140612
TU176631 lncRNA upstream 854035 10680771 ~ 10683612 (+) True AMCG00003066
TU177044 lncRNA downstream 94009 11631963 ~ 11633525 (+) True G140738
TU177186 lncRNA downstream 616859 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 748093 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 834045 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 846722 12384676 ~ 12385070 (+) False AMCG00003129
AMCG00003108 mRNA upstream 33643 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003095 mRNA upstream 180917 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003093 mRNA upstream 206521 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003094 mRNA upstream 230165 11300317 ~ 11307482 (+) True AMCG00003094
AMCG00003096 mRNA upstream 298343 11233448 ~ 11239304 (+) True AMCG00003096
AMCG00003109 mRNA downstream 8447 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003107 mRNA downstream 33911 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003111 mRNA downstream 248468 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003112 mRNA downstream 265057 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003115 mRNA downstream 360006 11897960 ~ 11911506 (+) True AMCG00003115
TU176980 other upstream 49763 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 325536 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 780807 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1757195 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2207183 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 836012 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1192777 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1340731 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1568502 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2642826 14180780 ~ 14184643 (+) True G141331

Expression Profile