RNA id: TU177044


Basic Information

Item Value
RNA id TU177044
length 1563
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G140738
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11631963 ~ 11633525 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGTCTGCCTTCTGTGGGATTTCAAATGCTACCACAGGGTTAATGGTACTCATGGGCGTCAGAGGCATTTCTTAAGATTGATGCCACCTAAAGAGGGCTGAATCTTATTCCAAATCATCCATACAATAATATAGTCTGCGGTTTATGTTAATCTTAATATTTGAAAGATTAAAACTATAGGTCTGCAAGCAGAATTTTTCACAACAAGCAGCATGACAGGAATATTGTAGACAGAGATTCAGAGGGGGGGGGACATTAAACCAGAGTTCAGGAGGCTTATTTAATGTTCCCCAAAGTCATTTTCTGAATTAGAAGTCTGAACTCTTTATAACATAGATTATCCATGTCTGATTATAGTTTAATTTCACTGGTACTTATacttacaaaaaatgaatgagGTACTTTTGCGTTCTAGCGTACTAGCAAATTGCCTGATCGCAAGCAGCACAGTATTACATTTCAGTCAAAGTTCAGATTTCCTATAACAAGAGATTATATGAAATGTTATTGTGAggagtaaacaaaacaaaagactaaAGCAGAACACTATAATTCAAAAGCCTGATTTTTGAACAAAATGACAGGCTCTGAATATTTGGCAGTAGATGCCTAAAGACGTATATACATTTCACCAAGACAGAAATGACTTCAAAGAGGAGTGCTTAACTAAAGATAATGTTAGGTTGAGGTTAAAGATTAGTTGTCCGGTTCCTGTCTGATCCTTAAGCCCTCTGTGCTGAAAACAGTGAATGGCAGCctgcctttaaaaatacatgtaagaaCTGTCTTTGCTGTCTTGGTGAAAGAACCAAACCTTCAGTTTTAGTTGGGCCTCCTTAGTTAAACCCTAGTTGAAATGTGGCCATTCATGTTCCAGTGACTCTTTCTAGTAAATATGGAGGGATGATGTCAGAATTTGCTACATTGCAGGCCTTGGTCTAATACCTCGTTTAGATAATTATGGACTGGTTGAAGATTTCAGTTCCATACAATACATGTCTCATTAAAACAACTACTTTCAGTTTTGAGGTCTGAGACAGATGCACACTGATTTAGTGTGACCAATCTAATTTCCAATATGATGTGTAGAGATAGTCAAAgcaaatttaatttttataatggtgggaaatgtctgttttggcAATATTCCACATTATGCTACAGTATAGCCATTTCAGGGTTGaactaagcaaaaaaaaaaagcccaagcTTCATTATTCCAGCTCCACACTCAAGTGCAGCATGGTCCACAAACATATTATGATACAATAAGTTAACAGGCAAAGTCCCTTCACATTATGCACAAATATCATGCAAATGctgtaagttttttttgtttaaacaaacttAGTGTATCAACACATAggtaaaacaaatccattacaCAAACATTaccagtaataaaaataaaattaaaaagtctgTACACAAATTCTGCACATATTAAAATagtacaaatgtttgttttttttccctcaataaAAGAGcacaaaaaaagtacaaaaataaatattctataTACAATCACACATGCCACCCCAGGATTAACATCACTGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177027 lncRNA upstream 94009 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 141301 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 150926 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 384685 11245256 ~ 11247278 (+) True G140632
TU176865 lncRNA upstream 422461 11207506 ~ 11209502 (+) True G140612
TU177186 lncRNA downstream 521288 12154813 ~ 12158751 (+) True G140857
TU177201 lncRNA downstream 652522 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 738474 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 751151 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 1188350 12821875 ~ 12824630 (+) True G140961
AMCG00003107 mRNA upstream 31921 11571865 ~ 11600042 (+) True AMCG00003107
AMCG00003109 mRNA upstream 83175 11546401 ~ 11548788 (+) True AMCG00003109
AMCG00003108 mRNA upstream 127959 11503027 ~ 11504004 (+) True AMCG00003108
AMCG00003095 mRNA upstream 275233 11331385 ~ 11356730 (+) True AMCG00003095
AMCG00003093 mRNA upstream 300837 11309690 ~ 11331126 (+) True AMCG00003093
AMCG00003111 mRNA downstream 152897 11786422 ~ 11797059 (+) True AMCG00003111
AMCG00003112 mRNA downstream 169486 11803011 ~ 11806356 (+) True AMCG00003112
AMCG00003115 mRNA downstream 264435 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003116 mRNA downstream 290802 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003122 mRNA downstream 368509 12002034 ~ 12012016 (+) True AMCG00003122
TU176980 other upstream 144079 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 419852 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 875123 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 1851511 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2301499 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 740441 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 1097206 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 1245160 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 1472931 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2547255 14180780 ~ 14184643 (+) True G141331

Expression Profile