RNA id: TU177066


Basic Information

Item Value
RNA id TU177066
length 957
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G140756
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11625425 ~ 11626381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttagagtaatatttattactaaaaCTCTCAAACAACAATTTTCAGACACAATTGGAACATATGAAACAGAATCAGTAGTTAGATTTTCTAACAGTGcttgaaaaatggaaatgtttctaAGGAGTATTTtcttgtgttctgtgtttttagtCATTAAcactttttcattcttcttttcaaTATTCTGTCTGAAATGTTGAAATTGGTACATCCCTGctaaaaatgttgtttactctttttattattattaagacttTTACATTAGCTggcattttttattgaattttataACGATCATTTCTGATATGCTGCCTTCtgacaatgtatttttccaatAGAATGCTCTATGTTCTCCAAGTATACCAAAAACAaagtcaaaagtattcactaatttattcaactatatgtatttatcaattatatatcttcagagtttgttgaacactgactCAACCTAGGTAAATCTGTAAAAATTCCCGTTGATTGGAGTGAATTAAGACAGGGAAATGTAAAACTTTCACAACCACTGCATTGATTGTACAGCACTTTGACAATATGTCTGGGATAAACAAGAACCTCTGGTAAATCTGGGAACTGTAGTACTAAAGcaaggtctctctctcttttacaaGTGGATTTTCCACAATTTACAACCTTAATAATTCTGCCTCAAATATGGCTTGGTCCTTCGAATAAGGTTCTTGTGTCCATTGCTGTGAAGAAACAGCCCTATAGGACACTTTGACACACATTCTCAACCCATTCTGTTATGATGTACTGTATTTGATACACTCATAAGGGCTTATTGCCTTTGTGAATTGAAATACTATTTTTTGGGGAAATAACAGAATATTTTGTAAACTCAACTAACGATAATTTTAGCAAACTGCCAAAAAGAgtttttgatttccttttgaatttagttttgttgAAGTTTCCAGCTAATGTTCAATGCA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177065 lncRNA downstream 5499 11618789 ~ 11619926 (-) False AMCG00003110
TU177049 lncRNA downstream 25469 11598058 ~ 11599956 (-) True G140742
TU176996 lncRNA downstream 291741 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 317036 11233668 ~ 11308389 (-) False G140648
TU176916 lncRNA downstream 317036 11305471 ~ 11308389 (-) True G140648
TU177075 lncRNA upstream 160033 11786414 ~ 11789926 (-) True G140764
TU177074 lncRNA upstream 169595 11795976 ~ 11797014 (-) True G140763
TU177212 lncRNA upstream 731065 12357446 ~ 12362204 (-) True G140883
TU177234 lncRNA upstream 976441 12602822 ~ 12603031 (-) True G140904
TU177236 lncRNA upstream 979371 12605752 ~ 12605952 (-) True G140906
AMCG00003110 mRNA downstream 2776 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003105 mRNA downstream 63120 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003103 mRNA downstream 147041 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003101 mRNA downstream 169772 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003102 mRNA downstream 251377 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003114 mRNA upstream 173274 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003113 mRNA upstream 181529 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003118 mRNA upstream 306085 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003117 mRNA upstream 311336 11937717 ~ 11962072 (-) True AMCG00003117
AMCG00003119 mRNA upstream 383235 12009616 ~ 12051093 (-) True AMCG00003119
TU176570 other downstream 1294053 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2387695 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2777585 8847032 ~ 8847840 (-) True G140006
TU176000 other downstream 3130829 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 3687184 7931257 ~ 7938241 (-) False AMCG00002970
TU177068 other upstream 14435 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 67625 11694006 ~ 11733762 (-) True G140757
TU177331 other upstream 1224640 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1224640 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1224640 12851021 ~ 12855341 (-) False AMCG00003144

Expression Profile