RNA id: TU177075


Basic Information

Item Value
RNA id TU177075
length 482
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G140764
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11786414 ~ 11789926 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTAGGTACTCTATGACGGCTGCCATGTAGACTGGTGCCCCCATGCCAATGCGGTACTTGTGTGTCCCGTGGCGCAGATACCGCATCATTCTGCCCACAGGGAAGATGACCCCTGCCCTGGCAGACCGGGACTGCTtggtgctttttttctttccccctcttGCTGACATCctttctcactccctctctcctaCAGAGGACAAATACGAGATTCTTTCTTGGATTCGGGCACCCAGGGGACTttttttttgttctccgCTACCGAATCACGTGAAGGCCCAGGTTTCCCTTTAAAATCCCCAAggagtttctcttttttttcctctctctctctatgctcGTATATTCCgttattttaaactaaaggcAACAACCAATGCATGCTCCTCCAGCGCAGCCTGTGTGCTACTGATGCTGGCGAGGGGAAAAATTCAGTTCAggagaaaaagaacagaaaacgCCCCCTGATTAGGGGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177066 lncRNA downstream 160033 11625425 ~ 11626381 (-) True G140756
TU177065 lncRNA downstream 166488 11618789 ~ 11619926 (-) False AMCG00003110
TU177049 lncRNA downstream 186458 11598058 ~ 11599956 (-) True G140742
TU176996 lncRNA downstream 452730 11332429 ~ 11333684 (-) True G140704
TU176917 lncRNA downstream 478025 11233668 ~ 11308389 (-) False G140648
TU177074 lncRNA upstream 6050 11795976 ~ 11797014 (-) True G140763
TU177212 lncRNA upstream 567520 12357446 ~ 12362204 (-) True G140883
TU177234 lncRNA upstream 812896 12602822 ~ 12603031 (-) True G140904
TU177236 lncRNA upstream 815826 12605752 ~ 12605952 (-) True G140906
TU177299 lncRNA upstream 938348 12728274 ~ 12739791 (-) False AMCG00003138
AMCG00003110 mRNA downstream 163765 11608463 ~ 11622649 (-) True AMCG00003110
AMCG00003105 mRNA downstream 224109 11551691 ~ 11562305 (-) True AMCG00003105
AMCG00003103 mRNA downstream 308030 11456240 ~ 11478384 (-) True AMCG00003103
AMCG00003101 mRNA downstream 330761 11439365 ~ 11455653 (-) True AMCG00003101
AMCG00003102 mRNA downstream 412366 11360427 ~ 11374048 (-) True AMCG00003102
AMCG00003114 mRNA upstream 9729 11799655 ~ 11802872 (-) True AMCG00003114
AMCG00003113 mRNA upstream 17984 11807910 ~ 11821314 (-) True AMCG00003113
AMCG00003118 mRNA upstream 142540 11932466 ~ 11935399 (-) True AMCG00003118
AMCG00003117 mRNA upstream 147791 11937717 ~ 11962072 (-) True AMCG00003117
AMCG00003119 mRNA upstream 219690 12009616 ~ 12051093 (-) True AMCG00003119
TU177067 other downstream 52652 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 138795 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 1455042 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 2548684 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 2938574 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 1061095 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 1061095 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 1061095 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 1071500 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 1637368 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile