RNA id: TU177186


Basic Information

Item Value
RNA id TU177186
length 3882
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G140857
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12154813 ~ 12158751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCTCTGCTGTAAGCGACATGGCAAAAATGACGATACTAAAATGTGTGAATTTAGGACACTGAGGGGGAAAAGTTTTGACAGAATATGTAAACACTAAAGCACAGCCACACTAATCACCACGTCAGGATGTTCTAAGTCGTAATTATTTGCCAGATGCTATGATAATAGATGTCACcctccttttccttttattttgtaagttacCTAGCACTGACTGACTATGGCAAGTTTCTGCTCCTCTAGAAGGTTATAATTGACATTTCCCTTTTAATGAAGATCAAATATCGACGCTCACATTTCCCACGGAAATAAACAGTTCTGAAAGTTACTGCAGGGAAGTGACATTTGAAATATCCGTTTCTgtacagatatttaaatgttaacggtaaaaaaaaatatattacacttAGCGCTGTTGTTGGTTGCAGTTCTTATCGGAAACTGAACTCGGTGATTGTTCTGGTAACGGACACATCTCTGCTCATGTCTGCCGTTTCATAAAGTAGTTGATTTAGCCTTTTGCCTATGTTACCATAGCAATGGTTTTTCAGAAGTGGCACTAACTAAAGGTTAAGAATCGGAGCTAGCGAGCAGAGCTGCTTGTTCTACAAATGTCATCTCTAAAACCACTAGCTAAAGGAAGGGAGAACAGGAGGTGAACATTATTCAAGGAATGCAGCTTCAGTTCAGGTGAGAGTAATGTTTATTTCAGCTATGTACAGTAACGCATGATTACATGACCTATGTTATTATATAACATCTTTCTTGCAAAATGCTCCACTGCAGATAGCAATGCCAGACAATGttaatatatcattataataagACATGAATAATGGGGACTGACTCTGGGCACTTTGTATTGGATTGTAGGTGCACAAGTTACAGCAGCACAAGCCACACTGAAACCGCTCTTCTCTGAACTGAAATCCAAACCCTTTGGCCACGTGTTTGTCTGAAACTCACAGTGAGCGACTTAGGGCAAGCCAAATTACCATTACGAGACATCTCGAAATGCATTTCCAgacatcctcaAAATATCTGaagatttctttaaatgaattagaaATATCTccatgatcatttggcttgccatagagaCCTAAAGAAAGCATGGATATCCCCGCTCAGAGCTGGGACTGCAAGCTTCACTCTTGCTTCAGACTTACCTTTCTCTACTAGAAAAATATTGCACAAAATCTGAATATACAACATCTGTATACATTAAAAGTAGCAGCCTTGTAACGCCAGGACATCGTATCTATTGCACAAAATGTGGCTTACATTCCATCCTcctatgcttttttttttttttaaaccgtcTGATcctcttgttttctttaaaacactttttaatgGCTTTCAGATTTCCAACTGGCATGAGAGCCAGTGCAGCCAAATGGCCTCAAAGCTGCAAACAGAAAACCCATGAAGACAAAACCAAGTTTAGTTTCCAAGTGAAGGTTTTGCTTCAGAAGGgcagaaattacacatttacttCCCAGTTCAGCATCTCTGTGGCCAGGATGTCAGGGTAATACAAGTACAGTATTTGCGCACTCAAATTTCATCAGTATTGATATCAATGCTTTCTTGGGTTCCCTGTCTATATTGTGCTGTGAATATAGTGACATACATTCAATGGTATGCAAGCACATCATCTTCCACAATTGCTTAGCTTTATAAACATTCtctcaacccccccacccaccacatACATTAAATTTcccaaaatgaaacaaaaacaaactgaaatcgAACCATTTAATCATCTCACTTCTTGTGGCTTttgaatacatatacacacccattacatttatataaagagCCCTCCATATGAAAATGAACTATCAGAACAAACTGTACAAACACCTTGAGCATAAATATTCCGTTTTCTTTGTTTGGGGGCAGGTTAAATACCATAACTATGTCCtagctgctcattttaatatggcagagctctgtgtatgtacagtgcTGGACAGAATTGAGAGAACACACAGACAATCTTTTTGAAATACAGctaggaaaggaaaaaacatttagaacaACATAGTATGTTGAACTAACCTTTGGTGCCATATATGACCAATAAGATCTTTAGTAAGGCATCTATATATAGACAGTTGAAATATGATCCTTACAAACAcgttttatattaacatttatatgtTAACATTACCTTGTATATGCCCTTTGTACATGTGCATATAAAACTATTGTCTGTGTTCACTTTCTGCAGCTCCACTTCAGTAAGATTGTCCatgtgctgttttcagttttgaccACCACTGTACAATgatgtgtagatgtgtgtgcttttgtttactCACTCACTCTGAAAAAACATCTCTAGGAAACTGTTGACCTACTtcctttaaatgaaaattaatattgtCTAGCATTATTGTACTACATTCTACCCCAAAcgttaaaacaaatatacaaaacaacaacaacacaaaataaaccctAAAGCAAGAACAGcaagatatacatatattaatttgacTAAATAATAGTAACAGGTGATAATTTAAGCCAGTGTTTCTGCTATGGTAATACAGTttgaacaaactaaaaaaaactattaaataatacaaaaaaacaaaccggAAACACTGAATCGTTCCAATCCTGGTCCCGAAAACAGTTTTGGTTTCTGTCCAAAGATTTGCACATGCAATGGCCTCACAAATCTCAAGCAAAAGTGATTCCTAAAATCCTTGACAGGAAGAGAATGAAGTTCAAAAGCATTGCAATAAAAATAGCTCACAAACAGCGATTTACAGAgggattaaaaacacattgcttCAACGAAGAGAACAAATGTCAAATTTAGGATGTTAAGGTTTAATCTGTCTGGGGTCAGGGGCATGAGGCTTGTAACTTACAACCGaaaacagattaataaataaacagcttgaATTGAAATATGGAAGACAATTGAacttttaaaccattttaaattgcCTCACATTCCTCAAAACGCAAAAGGTTCAACAGAAACTTGGTACAGGCTGCTGCTGAATGTTAGAGTATTCGATTTCCCACACCTTCTGTTAGCCTATATTACAAACCACTGTGTCTTCAGTTCACAcgtataatttaaaataaatctaaggAATTGTCTGTTCCTACCATAATAGAAAGAGAACCATTTAAGACTTATATgatccataaaaataaataacagattgaCTACAACCATTTCAATGGAATTATTCTAGAGATATAATTCTTtcagttaaacaaaataacttgttaGACACAGTAAACTTCAgactaaaaaaaacatcagatgCTGCTTGTGCAGCTCAGTCTTACAGTAACCGCACAATCAGGAATCCTACTGATGCCTAAGATCTACTCTACTCTACCATCTACTCAGGGTGGGGCCCATTCAAGGACAGTGTTTTGTGGTTTGAGCACCTATATTATCACCCAAAATCACTTCTCTAAGTGATTAGCCAAACACAGGATCGTCATTCCTACAAAAGCTTTGATATCCCAGCCTATGTGATGCAGAAGAGATCATTCTCCATGGGAATACTTGACAAGACGGCTCCACTGTGCATCAACTGGACTCTTAGGTTTGTCGTTTCAAAACAGGAAGTTTGACTATTAACAGCACGGTATTTGAGTGCTGAATAATAAGGCATGGTTAGCCATTACAAgactctttctttttcatttaattggaTTGGATCCTTGTCTTGCCGTTGGTGTTTAACAGaatactgtgttttttaattccattaGCAAGGGAGGTGAGAATATGTACCAGGCCACCCGTGGAGTGTGTTCAATATTACAAGATAATATGTACAAGAACAGCTtgatgacaaaacacaaaaagtacaactacaacaacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177044 lncRNA upstream 521288 11631963 ~ 11633525 (+) True G140738
TU177027 lncRNA upstream 616859 11537647 ~ 11537954 (+) True G140723
TU176981 lncRNA upstream 664151 11488230 ~ 11490662 (+) True G140694
TU176979 lncRNA upstream 673776 11480805 ~ 11481037 (+) True G140692
TU176900 lncRNA upstream 907535 11245256 ~ 11247278 (+) True G140632
TU177201 lncRNA downstream 127296 12286047 ~ 12286276 (+) True G140872
TU177208 lncRNA downstream 213248 12371999 ~ 12373831 (+) False AMCG00003129
TU177211 lncRNA downstream 225925 12384676 ~ 12385070 (+) False AMCG00003129
TU177315 lncRNA downstream 663124 12821875 ~ 12824630 (+) True G140961
TU177316 lncRNA downstream 663124 12821875 ~ 12831106 (+) False G140961
AMCG00003121 mRNA upstream 1462 12134125 ~ 12153351 (+) True AMCG00003121
AMCG00003120 mRNA upstream 23908 12122044 ~ 12130905 (+) True AMCG00003120
AMCG00003122 mRNA upstream 142797 12002034 ~ 12012016 (+) True AMCG00003122
AMCG00003116 mRNA upstream 224712 11924327 ~ 11930101 (+) True AMCG00003116
AMCG00003115 mRNA upstream 243307 11897960 ~ 11911506 (+) True AMCG00003115
AMCG00003125 mRNA downstream 75806 12234557 ~ 12239380 (+) True AMCG00003125
AMCG00003129 mRNA downstream 215067 12373818 ~ 12678159 (+) True AMCG00003129
AMCG00003128 mRNA downstream 522991 12681742 ~ 12682422 (+) True AMCG00003128
AMCG00003131 mRNA downstream 542377 12701128 ~ 12708232 (+) True AMCG00003131
AMCG00003139 mRNA downstream 564575 12723326 ~ 12723550 (+) True AMCG00003139
TU176980 other upstream 666929 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 942702 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 1397973 10754901 ~ 10756840 (+) True G140478
TU176317 other upstream 2374361 9778250 ~ 9780452 (+) True G140189
TU176137 other upstream 2824349 9325488 ~ 9330464 (+) True G140030
TU177209 other downstream 215215 12373966 ~ 12374360 (+) False AMCG00003129
TU177286 other downstream 571980 12730731 ~ 12739767 (+) True G140939
TU177338 other downstream 719934 12878685 ~ 12882998 (+) True AMCG00003141
TU177434 other downstream 947705 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 2022029 14180780 ~ 14184643 (+) True G141331

Expression Profile