RNA id: TU177236


Basic Information

Item Value
RNA id TU177236
length 201
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G140906
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12605752 ~ 12605952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttctaTGCAAgcataattgatttatttatttttagagtttGAAATGCTTTCATAAACCGTCAATTTTCCtagaatgaaaatgtacagcCAGTACTTTGAAACACTTATACAGTGGATGCAATTGCAAGAAATAGGTCAGACATTCAAAATCTCTTCAATAGGCTAAATCATTTTTTGGTTCAGGAAATCGACTAATTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177234 lncRNA downstream 2721 12602822 ~ 12603031 (-) True G140904
TU177212 lncRNA downstream 243548 12357446 ~ 12362204 (-) True G140883
TU177074 lncRNA downstream 808738 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 815826 11786414 ~ 11789926 (-) True G140764
TU177066 lncRNA downstream 979371 11625425 ~ 11626381 (-) True G140756
TU177299 lncRNA upstream 122322 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA upstream 122322 12728274 ~ 12739791 (-) True AMCG00003138
TU177329 lncRNA upstream 215950 12821902 ~ 12830926 (-) True G140971
TU177537 lncRNA upstream 801335 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 954567 13560519 ~ 13560839 (-) True G141175
AMCG00003133 mRNA downstream 19784 12579989 ~ 12585968 (-) True AMCG00003133
AMCG00003127 mRNA downstream 220726 12362262 ~ 12385026 (-) True AMCG00003127
AMCG00003126 mRNA downstream 442412 12158810 ~ 12163340 (-) True AMCG00003126
AMCG00003123 mRNA downstream 507339 12090153 ~ 12098413 (-) True AMCG00003123
AMCG00003124 mRNA downstream 531955 12053880 ~ 12073797 (-) True AMCG00003124
AMCG00003134 mRNA upstream 8053 12614005 ~ 12645249 (-) True AMCG00003134
AMCG00003136 mRNA upstream 75660 12681612 ~ 12699795 (-) True AMCG00003136
AMCG00003135 mRNA upstream 104379 12710331 ~ 12711929 (-) True AMCG00003135
AMCG00003137 mRNA upstream 111669 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003138 mRNA upstream 122286 12728238 ~ 12739807 (-) False AMCG00003138
TU177067 other downstream 871990 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 958133 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2274380 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3368022 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3757912 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 245069 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 245069 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 245069 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 255474 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 821342 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile